ChemChains : Download

December 15, 2009, at 04:03 PM by 137.48.19.42 -

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Publications that result from use of this model should reference the following paper:

to:

Publications that result from the use of this model should reference the following paper:

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Publications that result from the use of ChemChains should reference the following paper:

T Helikar and JA Rogers. 2009. ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists. BMC Systems Biology. 6;3:58.

December 15, 2009, at 02:17 PM by 137.48.19.42 -

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V. 2.10

to:

V. 1.20

December 15, 2009, at 02:16 PM by 137.48.19.42 -

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V. 2.10

Added a check for the existence of output nodes for the Patterns plugin
Bug concerning the behavior of outputAll fixed.
Errors from header files from g++4.3 fixed.
Bug for vis mode under outputAll fixed.
Revamped Plugins architecture.

April 22, 2009, at 11:34 PM by 72.215.222.175 -

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the initial release of ChemChains

to:

Initial release of ChemChains

April 22, 2009, at 11:33 PM by 72.215.222.175 -

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V. 1.0

to:

V. 1.10

The release of GCC 4.3 broke ChemChains due to some headers that were not properly included. Fixed.
Using the "-randInit" didn't properly generate random initial conditions. Fixed.

V. 1.01

When "True" was used as an initial condition for external inputs, the generated bit strings of the external input didn't correspond to the true 0/1 state. Fixed.

V. 1.00

April 22, 2009, at 11:29 PM by 72.215.222.175 -

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T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. >><<

to:

T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918.

April 22, 2009, at 11:26 PM by 72.215.222.175 -

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T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. >>termsOfUse<<

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T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. >><<

April 22, 2009, at 11:23 PM by 72.215.222.175 -

Changed lines 8-9 from:

T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918.

to:

T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. >>termsOfUse<<

April 22, 2009, at 11:19 PM by 72.215.222.175 -

Added lines 5-9:

Terms Of Use: This model [Signal Transduction Model of a Generic Fibroblast Cell]is placed in the public domain for use by the research community.

Publications that result from use of this model should reference the following paper:

T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918.

Changed lines 20-23 from:

Terms Of Use: This model [Signal Transduction Model of a Generic Fibroblast Cell]is placed in the public domain for use by the research community.

Publications that result from use of this model should reference the following paper:

T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918.

to:

Recent Versions of ChemChains

V. 1.0

the initial release of ChemChains

August 26, 2008, at 09:49 AM by 137.48.16.86 -

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Network descriptor Δ

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Network descriptor

August 26, 2008, at 09:48 AM by 137.48.16.86 -

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Network descriptor
Simulation specification file

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August 25, 2008, at 03:35 PM by 137.48.16.86 -

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August 25, 2008, at 03:34 PM by 137.48.16.86 -

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Terms Of Use: All data acquired within http://mathbio.unomaha.edu/Database/ (Mathbio) are placed in the public domain for use by the research community.

Publications that result from use of Mathbio should reference the following paper:

to:

Terms Of Use: This model [Signal Transduction Model of a Generic Fibroblast Cell]is placed in the public domain for use by the research community.

Publications that result from use of this model should reference the following paper:

August 25, 2008, at 03:32 PM by 137.48.16.86 -

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%define=termsOfUse lframe font-size=smaller bgcolor=red

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August 25, 2008, at 03:29 PM by 137.48.16.86 -

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to:

Terms Of Use: All data acquired within http://mathbio.unomaha.edu/Database/ (Mathbio) are placed in the public domain for use by the research community.

Publications that result from use of Mathbio should reference the following paper:

T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918.

August 25, 2008, at 03:28 PM by 137.48.16.86 -

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%define=termsOfUse lframe font-size=smaller bgcolor=red

August 25, 2008, at 03:27 PM by 137.48.16.86 -

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Signal Transduction Model of a Generic Fibroblast Cell

to:

Signal Transduction Model of a Generic Fibroblast Cell

August 25, 2008, at 03:25 PM by 137.48.16.86 -

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Signal Transduction Model of a Generic Fibroblast Cell

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