Bioinformatics.org
[NEU MS in Bioinformatics]
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  • CS101F Linux for Biologists, Level 1

    This course teaches biologists how to use the powerful Linux operating system to work with biological data.

    No programming experience is needed, just a need to utilize Linux for biology.

    Session 1
    Fundamentals of the Linux OS - filesystem, access and basic commands; navigation of the filesystem and basic file operations � reading, writing, merging, copying and moving
    Session 2
    Setting permissions of files and directories; file manipulations using awk and sed, file redirection and piping, command line execution of various bioinformatics programs; exercise to demonstrate getting data and software from the internet and crunching through some real data generated from experiment; shell scripting basics and an example of a bioinformatics workflow implemented with unix shell programming

    Homework assignments will involve running commands learned in the live lectures.

    This course is taught by Shailender Nagpal, M.S.

    Registration

    Registration for courses at Bioinformatics.org takes two steps:

    Step 1
    If you haven't already done so, create an on-line account to access the educational section of our website. Please note that the registration for our educational system is separate from that of the main website; you will require another account.
    Step 2
    Register for this course by sending in the registration form (PDF; use this form if paying by US checks, credit card or corporate purchase order).

    On-demand course held on-line

    This course might be taught on-demand, on-line. Please check the list of on-demand courses to see if this course can be taken as such.

    An on-demand version provides pre-recorded video lectures. Once registered, you may begin by viewing the first lecture video, and if you have any questions, you may then email the instructor.

    Slides are available with both on-demand and live of courses, and many also have examples (such as data and scripts). Assignments are also provided for your edification but are not graded. And, when finished, you may request a certificate of attendance.

    On-demand course tuition:

    • For-profit & government: $300 USD
    • Non-profit & self-pay: $200 USD
    • See below for additional discounts.

    Students who've taken the on-demand version of this course can access the course page here.

    Live course held online

    This course might also be taught live, on-line. Please check the calendar to see if it will be held in the near future.

    Live, online course tuition:
    • For-profit & government: $500 USD
    • Non-profit & self-pay: $300 USD
    • See below for additional discounts.

    Registration deadline: When full

    Students who've taken the live course can continue to access their course pages here. (Access to completed courses is available to enrolled students only, because of privacy and confidentiality issues.)

    Live course held on-site

    We can come to your facility to teach this course. Please contact us for additional information.

    Discounts

    Additional discounts are available as follows:

    • Professional members: 20% discount
    • Limited scholarships may also be available for those residing in low-income economies (please inquire).

    Certification

    This course is certified by Bioinformatics.org, one of the oldest and largest international affiliations in the field, and it will count as 3 "Continuing Scientific Education" (CSE) units (one unit per contact hour) within Bioinformatics.org. Students completing the course will receive a certificate attesting to that.

    Refund policy

    For any course type, if a student is not satisfied with the conduct or content of a course, they may request a full refund within the first two days of lecture. After two days but within a week, a 50% refund will be granted. After one week, a 100% credit toward another course will be granted. No refunds or credits apply beyond those stated here.

    Additional information

    Please contact us for questions or additional information.

    See also

     

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