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zEST: Gene discovery by EST clusters - Message forums

Discussion forums: Open Discussion

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Welcome to Open Discussion
Submitted by Unset; posted on Friday, November 08, 2002
Welcome to Open Discussion
where is the stuff ?
Submitted by Nobody; posted on Tuesday, December 03, 2002
Not much stuff available ;-) Karl
where is the stuff ?
Submitted by Nobody; posted on Tuesday, December 03, 2002
But yes, where is it ???
it's here.
Submitted by Hubert Wassner; posted on Wednesday, December 11, 2002
Hello, sorry if the web navigation is hard... You will see contigation examples here : http://bioinformatics.org/zEST/ (this link we'll redirect you to my home page.) I'm now producing cluster & consensus for with public EST of "Anopheles gambiae" (paludim vector mosiquito). I will put the results under the above adress... Other species will follow... thanks for your attention, Hubert. -- Hubert Wassner web : http://mapage.noos.fr/hubert.wassner/
software available?
Submitted by Nobody; posted on Sunday, April 13, 2003
Couldn't find any low-level details about how the new assembler is implemented (algorithms, coding language, limitations). Is there any trial version of the software available for download/evaluation?
CLOBB
Submitted by Nobody; posted on Monday, June 02, 2003
tried clustering with CLOBB. anyone used this script b4? would like to compare notes and opinion about this script
LArge clusters Problem
Submitted by Nobody; posted on Monday, May 02, 2005
Hi all, I am trying to cluster 300 K EST's that i got from the NCBI using stackPack. The clutsering give me results totally different from what is present in uniGene. I happen to get 2 large clusters (64k and 34k sequences). If i try to break them by increasing the identity or length of region compared, i get and huge amount of singletons. I was wondering if anyone dealt with such a hassle before ??? Any suggestions will be greately appreciated. Thank you bingo11{AT}hotmail.com
regarding protein modelling
Submitted by rida siddiqui; posted on Sunday, May 17, 2015
Are there any tutorials for 3D jigsaw
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