BACKGROUND

RESPONSIBILITIES

• Assist in building different modules of software pipelines for next-generation sequencing applications.
• Provide informatics support in development of clinical diagnostic tests
• Assist in mining/annotation of clinical data. In addition a strong understanding of the principles of genetics is a preferred plus. Good to moderate programming skills is required for this position.
• Manage current clinical pipelines including updates and collaborate with IT staff to coordinate software releases.
• Perform post sequence run, data quality assessment, troubleshooting.
• Assist in the analysis, acquisition, and loading of new data sources.
• Help plan small projects. Execute established project plans and suggest alternatives when appropriate. Proactively use available resources to resolve problems.
• Work collaboratively with the group.

REQUIREMENTS

• M.Sc. in bioinformatics, computer science or related field preferred
• Basic knowledge of algorithms, data structures, and scientific programming.
• Experience in a Unix/Linux environment, including proficiency in shell scripting, and scripting in a language such as Perl or Python (preferably Perl).
• Some experience with R statistical package or MatLab.
• Familiarity with common NGS tools (BWA/GATK/Picard Tools, etc).
• Familiarity using common bioinformatics databases (UCSC, NCBI, etc).
• Ability to manage multiple projects in a dynamic environment with changing priorities.
• Strong interest in molecular biology and genetics, and a willingness to learn concepts and terminology from these fields as needed.

PREFERENCES

• Thesis-level work showing scientific analytical thinking is a major plus.
• 1-2 years of experience in software development is a plus.
• Strong interpersonal skills and ability to work as part of a diverse team, while contributing to a high-quality and respectful work environment.
• Excellent oral and written communication skills, with the ability to communicate effectively to colleagues and staff across multi-disciplinary areas.
• Ability to partner with others to establish realistic goals and deliver work on schedule.

LOCALE

COMPENSATION

HOW TO APPLY