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Software: Tandem compliment repeat finder
Submitted by James F. Lynn; posted on Thursday, November 11, 2010
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Tandem compliment repeats are examples of multiple crossing (multi-context-sensitive languages) structures. Examples are: AGCT.TCGA (this example is also a mirror repeat), GCTC.CGAG (1st G paired with 4th position C. 2nd C paired wirh 5th position G...)
USAGE
The download demo is limited to scanning 2000 bp at a time in 2 files and finding perfect TCRs of length 12: e.g ATCGAT.TAGCTA
Create a simple text file called "DNA1" and "DNA2" and place in the same directory as TCR6.exe.
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