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RESPONSIBILITIES

The Bioinformatics Core (BIC) at Memorial Sloan-Kettering Cancer Center (MSKCC) in New York City (Manhattan) is seeking a Bioinformatics Engineer to perform next generation sequence data processing and analysis in a dynamic and exciting academic environment at the nexus of cancer biology, computer science, statistics and clinical research. Work will be performed in a small group atmosphere (approx. 15 members from diverse disciplines) with several active collaborators, and in concert with other Bioinformatics and Software Engineers.

Responsibilities:
Design, develop and operate computational pipelines for the analysis of next generation sequencing data. Work will include both large-scale projects and small custom jobs, and span a wide variety of analysis problems.

BIC facilitates scientific discoveries by supporting basic and clinical research groups. BIC is responsible for building training programs, research project support, web-based tools, a high performance computing facility and database integration of genomic, pathway and clinical information. More information about the Bioinformatics Core is available at http://cbio.mskcc.org/bic.

REQUIREMENTS

Master's degree, or equivalent, in computer science, bioinformatics, mathematics or a related field, and 2 years of Bioinformatics software development required
Strong computational/programming skills; including thorough experience with the following:
* Unix/Linux environment
* Clustered computing: (SGE, PBS, or LSF familiarity strongly desired)
* Next-generation analysis toolkits (PICARD, GATK, samtools, etc.)
Advanced skills in Perl (or Python)
Knowledge of Java and R is preferred.

HOW TO APPLY

To apply, send CV or resume to bic-recruit[at]cbio.mskcc.org and include #bxeng in the subject line.

POLICY

MSKCC is an affirmative action, equal opportunity employer.

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