Bioinformatics.org
[NEU MS in Health Informatics]
Not logged in
  • Log in
  • Bioinformatics.org
    Membership (37762+) Group hosting [?]
  • Wiki
  • Franklin Award
  • Sponsorships
  • Careers
    About bioinformatics
    Bioinformatics training
    Bioinformatics jobs

    Research
    All information groups
    Online databases Online analysis tools Online education tools More tools

    Development
    All software groups
    FTP repository
    SVN & CVS repositories [?]
    Mailing lists

    Forums
    News & Commentary
  • Submit
  • Archives
  • Subscribe

  • Jobs Forum
    (Career Center)
  • Submit
  • Archives
  • Subscribe
  • Molekel - Message forums

    Discussion forums: Open Discussion

    Expanded view | Monitor forum | Save place

    Message
    Re: Molekel 5.x request
    Submitted by Ugo Varetto; posted on Friday, June 08, 2007
    Hi, thanks for the feedback; in future versions it will be possible to pause the animation and see the arrows when the animation is paused; this can actually be done today by disabling animation into the animation dialog but we definitely need a pause button. Also note that the display of arrows in Molekel 4.3 is wrong because arrows always point in the same direction so if you take a snapshot chances are that the atom is actually moving in the direction opposite to the one shown by the arrow. It should be easy to add vibration number and IR intensity...will check.



    Post a followup to this message:
    You have to be logged in to post a reply.
    Thread view
    Molekel 5.x request
    Submitted by Lee Richter; posted on Saturday, April 28, 2007
    Not sure this is the right place to post a request but... I have been a 'religous' user of Molekel 4.3 for visualization of vibrations from Gaussian calculations. In general, I find it superior to Molden and Agui for that specific function. I'd like to suggest/request improvements in the new Molekel (tis way cool) with regard to this aspect of the program (which seem to not of caught up to it's older brother) Please include both the vibration number and the IR intensity in the vibration choice list (along with th frequency and symmetry). Please 'leave' the arrows displayed on when the animation is stopped Thanks very much -Lee
    Re: Molekel 5.x request
    Submitted by Ugo Varetto; posted on Friday, June 08, 2007
    Hi, thanks for the feedback; in future versions it will be possible to pause the animation and see the arrows when the animation is paused; this can actually be done today by disabling animation into the animation dialog but we definitely need a pause button. Also note that the display of arrows in Molekel 4.3 is wrong because arrows always point in the same direction so if you take a snapshot chances are that the atom is actually moving in the direction opposite to the one shown by the arrow. It should be easy to add vibration number and IR intensity...will check.

     

    Copyright © 2016 · Scilico, LLC