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    Software: inGAP: New software for analyzing next-gen genomic data
    Submitted by fq; posted on Monday, June 08, 2009 (1 comment)

    inGAP (Integrated Next-gen Genome Analysis Platform) is an integrated platform for next-generation sequencing projects, the core function of which is to detect SNPs and indels using a Bayesian algorithm.

    FEATURES

    • No read length restriction
    • Can detect most small indels in either single-end or paired-end data sets
    • Has a strong capability to identify variants based on a relatively divergent reference genome
    • Provides a user-friendly graphic interface
    • Can be used to detect intraspecific polymorphisms (including SNPs and indels) based on a pairwise comparison of multiple whole genomes
    • Employs a global heuristic searching approach to layout contigs based on one or more reference genomes
    • Also provides a handful of bioinformatic tools for read simulation, mutation incorporation, format conversion, etc.

    FOR MORE INFORMATION

    Please refer to the following link for detail: sites.google.com/site[...]ingap

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    This tool is being discussed on the SeqAnswers forum
    Submitted by Dan Bolser; posted on Saturday, July 04, 2009
    You can join the discussion here: http://seqanswers.com/forums/showthread.php?t=1885



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    Thread view
    This tool is being discussed on the SeqAnswers forum
    Submitted by Dan Bolser; posted on Saturday, July 04, 2009
    You can join the discussion here: http://seqanswers.com/forums/showthread.php?t=1885

     

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