Contents of the Bioinformatics.Org FTP pub directory as of Thu Apr 25 03:04:02 EDT 2024 abccsoftware/ abe/ abe-1.0-source.zip abe-1.0-user-manual.zip abe-1.0-win2k.exe abi/ ABI-1.0.tar.gz abiftake/ abiparser/ abiparser-0.17.tgz ABSmith/ smithwaterman.zip absmith: symbolic link to `ABSmith' AcE/ ace.pl aces/ ace: symbolic link to `AcE' testsets.human-0.1.0.tgz testsets.tar.gz advaitha/ algpeptconf/ ALiBio/ alibio-0.9.tar.gz alibio: symbolic link to `ALiBio' alignnemo/ alkahest/ aminonet/ AminoNet-1.0.zip AminoNet.1.0.zip AminoNet-2.0.zip amrita-bio/ anachemcancer/ anex/ ANEX_P.ver0.7.1.tgz ANEX_P.ver0.7.tgz Documents/ Blueprints/ blueprint1_ANEX.draft5_CC4.pdf Detailed_Components/ figures_simultaneous_moves_of_multiple_blocks_METH_draft10_CC4.pdf illustration_workflow_for_indel_hsts&mfacs.ver2_CC4.pdf simultaneous_moves_of_multiple_blocks.draft1_CC4.pdf simultaneous_moves_of_multiple_blocks_METH_draft10_CC4.pdf sppl_sppl_branch&merge_w_cmpl_gblocks_METH.draft1_CC4.pdf sppl_sppl_simultaneous_moves_of_multiple_blocks_METH.draft1_CC4.pdf figures&legends1_ANEX.draft3_CC4.pdf figures_sppl3_bp1_ANEX.draft8_CC4.pdf LASTPIECE/ Figures_Prob_Theory_for_case_iv_Lcl_PWA.draft8_CC4.pdf Prob_Theory_for_case_iv_Lcl_PWA.draft8_CC4.pdf references1_ANEX.draft6.pdf sppl_sppl_algorithm_to_reverse_CII.draft10_CC4.pdf suppl2_addendum.draft7_CC4.pdf suppl2_blueprint1_ANEX.draft5_CC4.pdf suppl3_blueprint1_ANEX.draft9_CC4.pdf suppl5_blueprint1_ANEX.draft9_CC4.pdf suppl_addendum.draft6_CC4.pdf suppl_blueprint1_ANEX.draft6_CC4.pdf Preprints/ KEZW_BI_ME00005.lastpiece.pdf KEZW_BI_ME00006.anex.pdf KEZW_BI_ME00007.srdmap.pdf Presentations/ ConBio2017_4AT27-01_by_Ezawa&Yada_note_CC4.pdf Ezawa2014.YLseminar20140618_CC4.pdf Published/ kezawa2016_BMCBioinfo17_133_ADD1.pdf kezawa2016_BMCBioinfo17_133_ADD3.zip kezawa2016_BMCBioinfo17_133.pdf kezawa2016_BMCBioinfo17_304_ADD1.pdf kezawa2016_BMCBioinfo17_304_ADD2.pdf kezawa2016_BMCBioinfo17_304.pdf kezawa2016_BMCBioinfo17_397_ADD1.pdf kezawa2016_BMCBioinfo17_397.pdf kezawa2016_BMCBioinfo17_457.pdf readme.Published.txt readme.Documents.txt ExOutputs_ANEX.ver0.7.1.tgz ExOutputs_LASTPIECE.ver0.3.1.tgz LASTPIECE_P.ver0.3.1.tgz LASTPIECE_P.ver0.3.tgz readme.ANEX_P.ver0.7.1.txt readme.Documents.txt readme.ExOutputs_ANEX.ver0.7.1.txt readme.ExOutputs_LASTPIECE.ver0.3.1.txt readme.LASTPIECE_P.ver0.3.1.txt TABLE_OF_CONTENTS.txt annhyb/ anovarray/ AnovArray.tar.gz anthedna/ antidb/ Antimicrobial/ antimicrobial: symbolic link to `Antimicrobial' antiml/ antisenseML.xsd antisenseML.xslt BIRC5.xml BIRC5-XSL Output.html miR-21.xml miR-21-XSL Output.html perl script/ anticonv.pl antisenseml_template.xls inputfile Perl Module(CPAN.org)/ libxml-perl-0.08.tar.tar XML-DOM-1.44.tar.tar XML-Grove-0.46alpha.tar.gz XML-RegExp-0.03.tar.gz perl script.rar README README.bak template.xml AntPred/ antpred: symbolic link to `AntPred' appvaldocs/ OQ_Protocol_v002.rtf.gz PQ_Protocol_v002.rtf.gz Validation_Plan_v002.rtf.gz Validation_Plan_v003.pdf.gz Validation_Plan_v004.pdf.gz arcstar/ testfile123.html argo/ arrayalizer/ asap/ asidb/ assemble/ 1.0/ 1.0.1/ assemble.jar CHANGELOG paradise.jar 1.0.2/ assemble.jar CHANGELOG geronimo-jta_1.1_spec-1.1.1.jar graph-matching.jar lucene-core-2.9.1.jar neo4j-commons-1.0.jar neo4j-index-1.0.jar neo4j-kernel-1.0.jar neo4j-remote-graphdb-0.6.jar neo4j-shell-1.0.jar paradise.jar README 1.0.3/ assemble.jar CHANGELOG launch_Assemble_for_Windows.bat updater.jar 1.0.4/ Assemble_1.0.4.zip 1.0.5_beta1/ assemble.jar CHANGELOG paradise.jar updater.jar 1.0.5_beta2/ assemble.jar CHANGELOG mypdb.zip paradise.jar Assemble_1.0.zip 1.0_RC1/ Assemble_1.0_RC1.tar.gz 1.0_RC2/ assemble.jar CHANGELOG paradise.jar tertiary_data.zip 1.0_RC3/ Assemble_1.0_RC3.tar.gz CHANGELOG algorithms/ carnac.tar.gz contrafold.tar.gz locarna-1.6.1.tar.gz locarna-1.6.2pre.tar.gz MC_Annotate.zip RNAfold_wrapper.sh RNAplot_wrapper.sh RNAVIEW.tar.gz ViennaRNA-1.8.5.tar.gz ViennaRNA.tar.gz SnowLeopard_Assemble_Update.zip updates.xml versions.xml assembly/ asterias/ atlas/ ayurveda/ ayurvedicdb/ ball/ balony/ Balony-latest-October 30 2013.jar Old/ Balony-latest-October 17 2012.jar Balony-latest-October 29 2013.jar bang/ basepad/ base.exe batcave/ bayallele/ bbar/ bbs/ data.tar.gz db.tar.gz bctool/ bdpg/ benchmark/ bertone/ bialgores/ bicat-plus/ BicAT_plus.rar bicchop/ binosys/ biobanner/ biobasestation/ biobrew/ srpms/ 3.0/ EMBOSS-2.6.0-1.src.rpm 3.1/ clustalw-1.8.3-1.src.rpm EMBOSS-2.9.0-6.src.rpm farmtools-2.0-1.src.rpm Fasta-3.4-1.src.rpm fftw-2.1.5-1.src.rpm gromacs-3.2.1-1.src.rpm hmmer-2.3.2-1.src.rpm modulefiles-1.0-2.src.rpm modulesenv-3.1.6-2.src.rpm mrbayes-3.0-1.src.rpm ncbitools-6.1.0-2.src.rpm phylip-3.61-5.src.rpm sgeblast-0.2-1.src.rpm wise-2.2.0-1.src.rpm wwwblast-Aug.06.2002-1.src.rpm 3.3/ clustalw-1.8.3-1.src.rpm EMBOSS-2.9.0-6.src.rpm farmtools-2.0-1.src.rpm Fasta-3.4-1.src.rpm fftw-2.1.5-1.src.rpm gromacs-3.2.1-1.src.rpm hmmer-2.3.2-1.src.rpm hmmer-2.3.2-4.src.rpm modulefiles-1.0-2.src.rpm modulefiles-1.0-3.src.rpm modulesenv-3.1.6-2.src.rpm mrbayes-3.0-1.src.rpm ncbitools-6.1.0-2.src.rpm phylip-3.61-5.src.rpm sgeblast-0.2-1.src.rpm wise-2.2.0-1.src.rpm wwwblast-Aug.06.2002-1.src.rpm 4.1/ 4.1.1/ biopython-1.40b-1.src.rpm byacc-1.9-29.src.rpm clustalw-1.8.3-1.src.rpm clustalw-mpi-0.13-1.src.rpm EMBOSS-3.0.0-1.src.rpm Fasta-3.4-1.src.rpm fftw-2.1.5-1.src.rpm flex-2.5.4a-34.src.rpm gromacs-3.2.1-1.src.rpm hmmer-2.3.2-4.src.rpm modeltest-3.7-1.src.rpm modulefiles-1.0-3.src.rpm modulesenv-3.1.6-2.src.rpm mpiblast-1.4.0-1.src.rpm mrbayes-3.1-1.src.rpm NCBI-2.2.12-1static.src.rpm Numeric-24.0b2-1.src.rpm phylip-3.65-1.src.rpm primer3-1.0.0-1.src.rpm probcons-1.10-1.src.rpm reportlab-1.20-1.src.rpm sgeblast-0.2-1.src.rpm t-coffee-2.66-1.src.rpm wise-2.2.0-1.src.rpm wwwblast-2.2-12.src.rpm biopython-1.40b-1.src.rpm byacc-1.9-29.src.rpm clustalw-1.8.3-1.src.rpm clustalw-mpi-0.13-1.src.rpm EMBOSS-3.0.0-1.src.rpm Fasta-3.4-1.src.rpm fftw-2.1.5-1.src.rpm flex-2.5.4a-34.src.rpm gromacs-3.2.1-1.src.rpm hmmer-2.3.2-4.src.rpm modeltest-3.7-1.src.rpm modulefiles-1.0-3.src.rpm modulesenv-3.1.6-2.src.rpm mpiblast-1.4.0-1.src.rpm mrbayes-3.1-1.src.rpm NCBI-2.2.12-1static.src.rpm Numeric-24.0b2-1.src.rpm phylip-3.65-1.src.rpm primer3-1.0.0-1.src.rpm probcons-1.10-1.src.rpm reportlab-1.20-1.src.rpm sgeblast-0.2-1.src.rpm t-coffee-2.66-1.src.rpm wise-2.2.0-1.src.rpm wwwblast-2.2-12.src.rpm srpms-other/ BioLinux-source.tar.gz BIOrpms-source.tar.gz biobrowser/ biocheminf/ bioclues/ biococoa/ biococoa12.zip biococoa15.zip biococoa16.zip biococoa-2.1.0-src.tgz biococoa-2.2.2-src.tgz BioCocoa.zip bioc-sharp/ biodp/ bioecma/ biogress/ bioinfo2008ucdd/ bioinfo-af-cnr/ bioinfo-ed/ bioinfojuit/ Tutorial.rar UDT.rar bioinformatics/ BiO-Professional.pdf bioinformatist/ BioinfoUnicz/ bioinfounicz: symbolic link to `BioinfoUnicz' bioinfo-wbench/ bioinfozilla/ bio-innovators/ bioinsilico/ biojafa/ biolegato/ biolet/ biolib/ bio-linux/ bio-linux-8.0.7.iso bio-linux-8.0.7.ova bio-linux-8.0.8.iso IntroductionToBio-Linux8_Dec2015.pdf qiime2-2018.11-moving-pictures-tutorial.ipynb qiime2-2018.4-moving-pictures-tutorial.ipynb biolore/ biomap/ bioneeds/ bioneeds.php EGTDC_PollingQuestions.doc Questionnaire_Databases.doc README User_Survey.doc BIO-NIX/ bio-nix: symbolic link to `BIO-NIX' bionmf/ bioNMF1.0.1.zip bioNMFSources1.0.1.zip bioNMFSources.zip bioNMF.zip bioonto/ biophp/ BioQuery/ bioquery: symbolic link to `BioQuery' bioremed/ bioscys/ bioseg/ bioseg-0.1.tar.gz bioseg-0.2.tar.gz bioseg-0.3.tar.gz bioseg-0.4.tar.gz bioseg-0.5.tar.gz bioseg-0.6.tar.gz bioseg-0.7.tar.gz bioseg-0.8.tar.gz release-0.8.tar.gz biosoa/ biosoftbuilds/ biosolutions/ biostat/ biosuite/ BioSVG/ BioSVG-0.01.tar.gz BioSVG-0.02.tar.gz biosvg: symbolic link to `BioSVG' bio-toolkit/ biovm/ Bio-Wave/ bio-wave: symbolic link to `Bio-Wave' birch/ bisor/ blast2malign/ blast2malign-0.1.tar.gz blast2malign-0.2.tar.gz blast2malign-0.3.tar.gz blast2ps/ blast2ps.0.2.tar.gz blast2ps-0.3.tar.gz blast2ps.tar.gz blastometer/ blissgenetics/ blogo/ Blogo_1.0.tar.gz bma/ bmw/ bna/ bna.tar.gz BranchClust/ branchclust: symbolic link to `BranchClust' bsmlcreadit/ BTL/ BTL3.tar.gz btl: symbolic link to `BTL' c2analyzer/ CalPred/ CalPred-Server-v1.0.zip calpred: symbolic link to `CalPred' cancer/ canevolvability/ CSim-2000-6-14.zip canjovdb/ CAT/ catch/ CATCH3.zip CATCH_User_manual_2010.pdf.gz CATCH_User_manual_2011.pdf data.zip catmap-uan/ cat-o/ cat: symbolic link to `CAT' cbesw/ CBESW.tar.gz cd-hit/ Aug-2003/ BINARY/ cd-hit mcd-hit README SOURCE/ Algorithm Algorithm.cd-hi cd-hi-class.c++ cd-hi.h cd-hi-init.h cd-hit.c++ Makefile mcd-hit.c++ post_cluster.pl README cd-hi-Jul-30-01.tar.gz cd-hit-2006-0215.tar.gz cd-hit-2006-0411.tar.gz cd-hit-2006-1204.tar.gz cd-hit-2007-0131.tar.gz cd-hit-2007-0131-win32.tar.gz cd-hit-2009-0421.tar.gz cd-hit-2009-0421-win32.tar.gz cd-hit-2009-0427.tar.gz cdhit-2009-1020-release-4.0-beta.tar.gz cd-hit-Aug-01-03.tar.gz cd-hit-Jan-23-02.tar.gz cd-hit-Mar-08-04.tar.gz cdhit-v4.0-2010-04-20.tar.gz cd-hit-v4.3-2010-10-25.tgz cd-hit-v4.5.4-2011-03-07.tgz CURRENT goToWebsite.php TEST_RESULTS/ Globins/ globins630.fa globins630.fa.40 globins630.fa.40.bak.clstr globins630.fa.40.clstr globins630.fa.50 globins630.fa.50.bak.clstr globins630.fa.50.clstr globins630.fa.60 globins630.fa.60.bak.clstr globins630.fa.60.clstr globins630.fa.70 globins630.fa.70.bak.clstr globins630.fa.70.clstr globins630.fa.80 globins630.fa.80.bak.clstr globins630.fa.80.clstr globins630.fa.90 globins630.fa.90.bak.clstr globins630.fa.90.clstr globins630.plot.gif globins630.plot.txt README Truncated-Sequences-Test/ README truncated_c_terminal.test.fa truncated_c_terminal.test.fa.out.100 truncated_c_terminal.test.fa.out.100.clstr truncated_c_terminal.test.fa.out.99 truncated_c_terminal.test.fa.out.99.clstr truncated_n_terminal.test.fa truncated_n_terminal.test.fa.out.100 truncated_n_terminal.test.fa.out.100.clstr truncated_n_terminal.test.fa.out.99 truncated_n_terminal.test.fa.out.99.clstr X-Character-Test/ two_random_sequences.fa two_random_sequences.fa.40 two_random_sequences.fa.40.bak.clstr two_random_sequences.fa.40.clstr two_random_sequences_with_a_whole_lot_of_x.fa two_random_sequences_with_a_whole_lot_of_x.fa.40 two_random_sequences_with_a_whole_lot_of_x.fa.40.bak.clstr two_random_sequences_with_a_whole_lot_of_x.fa.40.clstr CDMgroup/ cdmgroup: symbolic link to `CDMgroup' cdnctc13129/ Additional_File_1.zip Additional_File_2.zip C_diphtheriae_reannotation.embl.tar.gz cebib/ celutil/ celutil-1.0.src.tar.gz cgview/ chemchains/ CC1.01.tar.gz CC1.01.zip CC1.10.tar.gz CC1.10.zip CC1.20.tar.gz CC1.20.zip CC1.21.tar.gz CC1.21.zip CC1.22.tar.gz CC1.22.zip ChemChains1.0.tar.gz ChemChains1.0.zip chemcom/ chemisosteres/ chinook/ chromhome/ citeman/ citeman-0.2.zip cligen/ clusterfunc/ cmview/ codon/ cua v1.0 10-23-04.zip CoffeeMug/ coffeemug: symbolic link to `CoffeeMug' combosa3d/ combosa3dv1_1.zip combosa3d.zip compare-genome/ compled/ !CONTENTS coralgenes/ craig/ crispr/ crnpred/ crnpred/ 00README crnpred-1.1.tar.gz bin/ run_crn.sh make.sh sample/ 3chyA.fa 3chyA.out d1a6m__.out d1a6m__.prof d1ifra_.out d1ifra_.prof d3nul__.out d3nul__.prof d8abp__.out d8abp__.prof src/ blast.c blast.h ChangeLog chkaccu.c chkaccu.h crndump.c eprintf.c eprintf.h lpredm.c Makefile secdp.c sov.c sov.h xesn.c xesn.h xpredm.c xpredm.h xpredmsub.c crnpred.tar.gz w2000/ Mat/ win2000_21.0.01a.mat win2000_21.0.01b.mat win2000_21.0.01c.mat win2000_21.0.01d.mat win2000_21.0.01e.mat win2000_21.0.01f.mat win2000_21.0.01g.mat win2000_21.0.01h.mat win2000_21.0.01i.mat win2000_21.0.01j.mat win2000_21.0.01k.mat win2000_21.0.01l.mat win2000_21.0.01m.mat win2000_21.0.01n.mat win2000_21.0.01o.mat win2000_21.0.01p.mat win2000_21.0.01q.mat win2000_21.0.01r.mat win2000_21.0.01s.mat win2000_21.0.01t.mat wmat2000_20_1.0a.mat wmat2000_20_1.0b.mat wmat2000_20_1.0c.mat wmat2000_20_1.0d.mat wmat2000_20_1.0e.mat wmat2000_20_1.0f.mat wmat2000_20_1.0g.mat wmat2000_20_1.0h.mat wmat2000_20_1.0i.mat wmat2000_20_1.0j.mat wmat2000_20_1.0k.mat wmat2000_20_1.0l.mat wmat2000_20_1.0m.mat wmat2000_20_1.0n.mat wmat2000_20_1.0o.mat wmat2000_20_1.0p.mat wmat2000_20_1.0q.mat wmat2000_20_1.0r.mat wmat2000_20_1.0s.mat wmat2000_20_1.0t.mat mkwmats.sh w_cn/ xwoutalla.mat xwoutallb.mat xwoutallc.mat xwoutalld.mat xwoutalle.mat xwoutallf.mat xwoutallg.mat xwoutallh.mat xwoutalli.mat xwoutallj.mat xwoutallk.mat xwoutalll.mat xwoutallm.mat xwoutalln.mat xwoutallo.mat xwoutallp.mat xwoutallq.mat xwoutallr.mat xwoutalls.mat xwoutallt.mat WMAT_ENS WMATS w_rwco/ xwoutalla.mat xwoutallb.mat xwoutallc.mat xwoutalld.mat xwoutalle.mat xwoutallf.mat xwoutallg.mat xwoutallh.mat xwoutalli.mat xwoutallj.mat xwoutallk.mat xwoutalll.mat xwoutallm.mat xwoutalln.mat xwoutallo.mat xwoutallp.mat xwoutallq.mat xwoutallr.mat xwoutalls.mat xwoutallt.mat w_ss/ xwoutalla.mat xwoutallb.mat xwoutallc.mat xwoutalld.mat xwoutalle.mat xwoutallf.mat xwoutallg.mat xwoutallh.mat xwoutalli.mat xwoutallj.mat xwoutallk.mat xwoutalll.mat xwoutallm.mat xwoutalln.mat xwoutallo.mat xwoutallp.mat xwoutallq.mat xwoutallr.mat xwoutalls.mat xwoutallt.mat w5000/ Mat/ win5000_21.0.01a.mat win5000_21.0.01b.mat win5000_21.0.01c.mat win5000_21.0.01d.mat win5000_21.0.01e.mat win5000_21.0.01f.mat win5000_21.0.01g.mat win5000_21.0.01h.mat win5000_21.0.01i.mat win5000_21.0.01j.mat win5000_21.0.01k.mat win5000_21.0.01l.mat win5000_21.0.01m.mat win5000_21.0.01n.mat win5000_21.0.01o.mat win5000_21.0.01p.mat win5000_21.0.01q.mat win5000_21.0.01r.mat win5000_21.0.01s.mat win5000_21.0.01t.mat wmat5000_50_1.0a.mat wmat5000_50_1.0b.mat wmat5000_50_1.0c.mat wmat5000_50_1.0d.mat wmat5000_50_1.0e.mat wmat5000_50_1.0f.mat wmat5000_50_1.0g.mat wmat5000_50_1.0h.mat wmat5000_50_1.0i.mat wmat5000_50_1.0j.mat wmat5000_50_1.0k.mat wmat5000_50_1.0l.mat wmat5000_50_1.0m.mat wmat5000_50_1.0n.mat wmat5000_50_1.0o.mat wmat5000_50_1.0p.mat wmat5000_50_1.0q.mat wmat5000_50_1.0r.mat wmat5000_50_1.0s.mat wmat5000_50_1.0t.mat w_cn/ xwoutalla.mat xwoutallb.mat xwoutallc.mat xwoutalld.mat xwoutalle.mat xwoutallf.mat xwoutallg.mat xwoutallh.mat xwoutalli.mat xwoutallj.mat xwoutallk.mat xwoutalll.mat xwoutallm.mat xwoutalln.mat xwoutallo.mat xwoutallp.mat xwoutallq.mat xwoutallr.mat xwoutalls.mat xwoutallt.mat WMAT_ENS WMATS w_rwco/ xwoutalla.mat xwoutallb.mat xwoutallc.mat xwoutalld.mat xwoutalle.mat xwoutallf.mat xwoutallg.mat xwoutallh.mat xwoutalli.mat xwoutallj.mat xwoutallk.mat xwoutalll.mat xwoutallm.mat xwoutalln.mat xwoutallo.mat xwoutallp.mat xwoutallq.mat xwoutallr.mat xwoutalls.mat xwoutallt.mat w_ss/ xwoutalla.mat xwoutallb.mat xwoutallc.mat xwoutalld.mat xwoutalle.mat xwoutallf.mat xwoutallg.mat xwoutallh.mat xwoutalli.mat xwoutallj.mat xwoutallk.mat xwoutalll.mat xwoutallm.mat xwoutalln.mat xwoutallo.mat xwoutallp.mat xwoutallq.mat xwoutallr.mat xwoutalls.mat xwoutallt.mat wlin/ w_1d/ lwout00a.mat lwout01a.mat lwout02a.mat lwout03a.mat lwout04a.mat lwout05a.mat lwout06a.mat lwout07a.mat lwout08a.mat lwout09a.mat lwout10a.mat lwout11a.mat lwout12a.mat lwout13a.mat lwout14a.mat w_cn/ lwout00a.mat lwout01a.mat lwout02a.mat lwout03a.mat lwout04a.mat lwout05a.mat lwout06a.mat lwout07a.mat lwout08a.mat lwout09a.mat lwout10a.mat lwout11a.mat lwout12a.mat lwout13a.mat lwout14a.mat w_rwco/ lwout00a.mat lwout01a.mat lwout02a.mat lwout03a.mat lwout04a.mat lwout05a.mat lwout06a.mat lwout07a.mat lwout08a.mat lwout09a.mat lwout10a.mat lwout11a.mat lwout12a.mat lwout13a.mat lwout14a.mat w_ss/ lwout00a.mat lwout01a.mat lwout02a.mat lwout03a.mat lwout04a.mat lwout05a.mat lwout06a.mat lwout07a.mat lwout08a.mat lwout09a.mat lwout10a.mat lwout11a.mat lwout12a.mat lwout13a.mat lwout14a.mat WMAT_ENS WMATS WMATS2000 WMATS5000 WMATS_LIN csminer/ ctls/ cvg/ cyntenator/ cyntenator-1.0-2009-08-17.tar.gz cyntenator-1.0-2009-08-17.tgz dbbp/ dcpp/ delila-genome/ Delgen-1.0.tar.gz deltastat/ deltastat-0.2.0.tar.gz deltastat-0.3.1.tar.gz dengueDTDB/ denguedtdb: symbolic link to `dengueDTDB' DENSERM/ DENSERM_P.ver0.5.tar.gz Documents/ Published/ ezawa_et_al2013_BMCGenet14_37_ADD1.pdf ezawa_et_al2013_BMCGenet14_37_ADD2.pdf ezawa_et_al2013_BMCGenet14_37.pdf readme.Published.txt NullDistributions_comb.v0.3.tar.gz NullDistributions.v0.3.tar.gz NullDistributions.v0.5.tar.gz readme.v0.5.txt denserm: symbolic link to `DENSERM' TABLE_OF_CONTENTS.txt deodas/ dip4fish/ disperse/ data/ CCDS.20080902.txt ccds-latest.txt: symbolic link to `CCDS.20080902.txt' dbSNP_127.txt dbSNP-latest.txt: symbolic link to `dbSNP_127.txt' disperse-1.0.0-distribution.tar.gz disperse-1.0.0-distribution.zip disperse-1.0.1-distribution.tar.gz disperse-1.0.1-distribution.zip disperse-1.0.1.tar.gz disperse-1.0.1.zip disperse-1.0.2-distr.tar.gz disperse-1.0.2-distr.zip disperse-1.0.3-distribution.tar.gz disperse-1.0.3-distribution.zip releases/ edu/ stanford/ disperse/ 1.0.0/ disperse-1.0.0.jar disperse-1.0.0.jar.md5 disperse-1.0.0.jar.sha1 disperse-1.0.0-javadoc.jar disperse-1.0.0-javadoc.jar.md5 disperse-1.0.0-javadoc.jar.sha1 disperse-1.0.0.pom disperse-1.0.0.pom.md5 disperse-1.0.0.pom.sha1 disperse-1.0.0-sources.jar disperse-1.0.0-sources.jar.md5 disperse-1.0.0-sources.jar.sha1 1.0.1/ disperse-1.0.1.jar disperse-1.0.1.jar.md5 disperse-1.0.1.jar.sha1 disperse-1.0.1-javadoc.jar disperse-1.0.1-javadoc.jar.md5 disperse-1.0.1-javadoc.jar.sha1 disperse-1.0.1.pom disperse-1.0.1.pom.md5 disperse-1.0.1.pom.sha1 disperse-1.0.1-sources.jar disperse-1.0.1-sources.jar.md5 disperse-1.0.1-sources.jar.sha1 1.0.2/ disperse-1.0.2.jar disperse-1.0.2.jar.md5 disperse-1.0.2.jar.sha1 disperse-1.0.2-javadoc.jar disperse-1.0.2-javadoc.jar.md5 disperse-1.0.2-javadoc.jar.sha1 disperse-1.0.2.pom disperse-1.0.2.pom.md5 disperse-1.0.2.pom.sha1 disperse-1.0.2-sources.jar disperse-1.0.2-sources.jar.md5 disperse-1.0.2-sources.jar.sha1 1.0.3/ disperse-1.0.3.jar disperse-1.0.3.jar.md5 disperse-1.0.3.jar.sha1 disperse-1.0.3.pom disperse-1.0.3.pom.md5 disperse-1.0.3.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 net/ sf/ apptools/ apptools/ 1.5.0/ apptools-1.5.0.pom apptools-1.5.0.pom.md5 apptools-1.5.0.pom.sha1 apptools-core/ 1.5.0/ apptools-core-1.5.0.jar apptools-core-1.5.0.jar.md5 apptools-core-1.5.0.jar.sha1 apptools-core-1.5.0.pom apptools-core-1.5.0.pom.md5 apptools-core-1.5.0.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 apptools-platform/ 1.5.0/ apptools-platform-1.5.0.jar apptools-platform-1.5.0.jar.md5 apptools-platform-1.5.0.jar.sha1 apptools-platform-1.5.0.pom apptools-platform-1.5.0.pom.md5 apptools-platform-1.5.0.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 apptools-workbench/ 1.5.0/ apptools-workbench-1.5.0.jar apptools-workbench-1.5.0.jar.md5 apptools-workbench-1.5.0.jar.sha1 apptools-workbench-1.5.0.pom apptools-workbench-1.5.0.pom.md5 apptools-workbench-1.5.0.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 textio/ 0.2/ textio-0.2.jar textio-0.2.jar.md5 textio-0.2.jar.sha1 textio-0.2.pom textio-0.2.pom.md5 textio-0.2.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 org/ moltools/ moltools/ 1.4.0/ moltools-1.4.0.pom moltools-1.4.0.pom.md5 moltools-1.4.0.pom.sha1 moltools-core/ 1.4.0/ moltools-core-1.4.0.jar moltools-core-1.4.0.jar.md5 moltools-core-1.4.0.jar.sha1 moltools-core-1.4.0.pom moltools-core-1.4.0.pom.md5 moltools-core-1.4.0.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 moltools-design/ 1.4.0/ moltools-design-1.4.0.jar moltools-design-1.4.0.jar.md5 moltools-design-1.4.0.jar.sha1 moltools-design-1.4.0.pom moltools-design-1.4.0.pom.md5 moltools-design-1.4.0.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 moltools-workbench/ 1.4.0/ moltools-workbench-1.4.0.jar moltools-workbench-1.4.0.jar.md5 moltools-workbench-1.4.0.jar.sha1 moltools-workbench-1.4.0.pom moltools-workbench-1.4.0.pom.md5 moltools-workbench-1.4.0.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 probemaker/ 1.5.0/ probemaker-1.5.0.pom probemaker-1.5.0.pom.md5 probemaker-1.5.0.pom.sha1 probemaker-core/ 1.5.0/ probemaker-core-1.5.0.jar probemaker-core-1.5.0.jar.md5 probemaker-core-1.5.0.jar.sha1 probemaker-core-1.5.0.pom probemaker-core-1.5.0.pom.md5 probemaker-core-1.5.0.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 probemaker-stdext/ 1.5.0/ probemaker-stdext-1.5.0.jar probemaker-stdext-1.5.0.jar.md5 probemaker-stdext-1.5.0.jar.sha1 probemaker-stdext-1.5.0.pom probemaker-stdext-1.5.0.pom.md5 probemaker-stdext-1.5.0.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 probemaker-swingui/ 1.5.0/ probemaker-swingui-1.5.0.jar probemaker-swingui-1.5.0.jar.md5 probemaker-swingui-1.5.0.jar.sha1 probemaker-swingui-1.5.0.pom probemaker-swingui-1.5.0.pom.md5 probemaker-swingui-1.5.0.pom.sha1 maven-metadata.xml maven-metadata.xml.md5 maven-metadata.xml.sha1 snapshots/ distributome/ dnacgr/ dnacgr-0.2.tar.gz dnalinux/ dna50p.iso dnalinux.zip server591.iso.bz2 server592.iso.bz2 test.tgz easybiodb/ easyblast/ ebbie/ ecell2/ ecell201win.zip ecell220beta-patch-1.exe ecell220setup.exe ecell225web-all-in-one.exe ecell225web-minimal-set.exe ecell226web-all-in-one.exe ecell226web-minimal-set.exe manual220.zip PerlSetupWEB.exe setbcc.exe ecobiosolutions/ emapimputation/ emapimputation.zip emblex/ emblex.html enzyme/ esp/ espsim/ ESPSim.zip Excel2SVM/ excel2svm: symbolic link to `Excel2SVM' exondata/ Aspergillus.fumigatus.tar.gz A.thaliana.tar.gz burge-1997.tar.gz burset-guigo-1996.tar.gz human-features-chr10.tar.gz human-features-chr11.tar.gz human-features-chr12.tar.gz human-features-chr13.tar.gz human-features-chr14.tar.gz human-features-chr15.tar.gz human-features-chr16.tar.gz human-features-chr17.tar.gz human-features-chr18.tar.gz human-features-chr19.tar.gz human-features-chr1.tar.gz human-features-chr20.tar.gz human-features-chr21.tar.gz human-features-chr22.tar.gz human-features-chr2.tar.gz human-features-chr3.tar.gz human-features-chr4.tar.gz human-features-chr5.tar.gz human-features-chr6.tar.gz human-features-chr7.tar.gz human-features-chr8.tar.gz human-features-chr9.tar.gz human-features-chrX.tar.gz human-features-chrY.tar.gz Malaria.tar.gz Mus.musculus.tar.gz rice100.tar.gz eyelims/ fasimu/ fass/ fct/ ffca/ ffca-1.01.tar.gz ffca-1.0.tar.gz ffct/ findtrna/ firstglance/ FishNChips/ fishnchips: symbolic link to `FishNChips' fishpathogens/ FLIMS/ flims: symbolic link to `FLIMS' forrester/ fpg/ fragsize/ fragzise_setup1.zip fragzise_source1.zip setup1.exe fragvlib/ FRASS/ frass: symbolic link to `FRASS' freemol/ fskit/ fs_kit_gui.zip fs_kit.zip gb-cartool/ gbctr/ gbioseq/ gbioseq-0.2.2.tar.gz gbioseq-0.2.exe gbioseq-0.3.exe gbioseq.exe GBPPred/ gbppred: symbolic link to `GBPPred' gclib/ gdl/ gdl-1.0.0.tar.gz geca/ gems/ gemvid/ gemvid06.tar.gz gemvid-2008_10_26_1816.tar.gz gemvid-2008_11_27_1515.tar.gz gemvid-2009_02_07_1817.tar.gz genclip/ Gencytis/ gencytis: symbolic link to `Gencytis' genealiases/ genealiases.tar.gz gened/ genegnome/ genetdb/ genetdb.data.core.r1.tar.gz genetdb.data.networks.r1.tar.gz geneticaddress/ genewiki/ genlux/ genomeartist/ GenomeARTIST_v1.15_src.zip GenomeARTIST_v1.15.zip GenomeARTIST_v1.17b_src.zip GenomeARTIST_v1.17b.zip GenomeARTIST_v1.19_src.zip GenomeARTIST_v1.19.zip genomedispltool/ Bundle.zip genomics/ genopolisdb/ genpak/ Genquire/ Genquire_3_00a.tar.gz Genquire_3_00.tar.gz Genquire_3.02.tar.gz Genquire_3.03.tar.gz Genquire_3.40.zip Genquire.3.4.1.tar.gz GenquireInstaller_v7.tar.gz GenquireInstaller_v8.tar.gz GenquireInstall_v6.tar.gz Installer_v5.tar.gz genquire: symbolic link to `Genquire' WinGenquire1_1.zip WinGenquire.zip GFIT/ gfit: symbolic link to `GFIT' ghemical/ Gints/ gints: symbolic link to `Gints' gipsy/ dataset.zip DB.zip Dependencies.Unix.zip Dependencies.Windows.zip GIPSy_Installer.jar GIPSy.Installer.jar GIPSy.jar Manual-1.1.2.pdf Manual.pdf g-language/ G-language_1.0.0beta_linux.tar.gz g-language-1.6.10.tar.gz g-language-1.6.11.tar.gz g-language-1.6.12.tar.gz g-language-1.6.13.tar.gz g-language-1.6.4.tar.gz g-language_1.6.4.tgz g-language-1.6.5.tar.gz g-language-1.6.6.tar.gz g-language-1.6.7.tar.gz g-language-1.6.8.tar.gz g-language-1.6.9.tar.gz g-language-1.7.0.tar.gz g-language-1.7.1.tar.gz G-language_GAE_1.0.2b_RH7.0-2.tar.gz G-language_GAE_1.0.2b_RH7.3.tar.gz G-language_GAE_1.0.2_windows_setup.exe G-language_GAE_v.1.49_Windows_setup.exe G-language_GAE_v2_MacOSX_10.2_mod1.tgz G-language_GAE_v2_MacOSX_10.2.tgz G-language_GAE_v2_MacOSX_10.3.tgz G-language_GAE_v.2_PR3_1_linux.tar.gz G-language_GAE_v.2_PR3_linux.tar.gz gln/ go2msig/ go2msig_release_02_08_2012.tar.gz GO4J/ go4j1.1.zip go4j.tar.gz go4j.zip go4j: symbolic link to `GO4J' gobu/ gpblast/ gratin/ grimm-ex/ grn/ GUIBlast/ blastgui.zip guiblast.zip guiblast: symbolic link to `GUIBlast' gvenn/ haplocheck/ harwell/ haystack/ helix/ histocheck/ hiv-ckr5/ hydroplot/ hypo/ ibg/ ibpetrinet/ ideas/ iikmta/ immigrant/ immune-b/ IMTC/ imtc: symbolic link to `IMTC' iocbio/ isakti/ Ishmael/ ishmael: symbolic link to `Ishmael' ISSCD/ isscd: symbolic link to `ISSCD' ivun/ JaMBW/ jambw: symbolic link to `JaMBW' jannotatix/ jannotatix.jar plugins/ alignace.zip genomatix.zip meme.zip motifsampler.zip plantcare.zip plugins.alglist javablastclient/ java-r-nova/ jbdp/ jcoast/ JDesigner/ JDSetup.exe jdesigner: symbolic link to `JDesigner' jinrescut/ jmcl/ MclInterface001.tar.gz MclInterface.tar.gz jmol-tutorials/ jprofilegrid/ jprotalign/ linux/ JTm-align.tar.gz windowsnoVM/ JTM-align.exe ReadMe.txt windowsVM/ JTM-align.exe ReadMe.txt jSight/ Blast_blast_blast.tjar Genome_walker.tjar installer_210a.exe installer_210a.jar installer_210.exe installer_210.jar installer_211.bin installer_211.exe installer_211.jar installer_212.exe installer_212.jar installer_300alpha.jar installer_needJRE_210a.exe installer_needJRE_210.exe installer_needJRE_211.exe installer_needJRE_212.exe Mandrakes.htm Protein_explorer.tjar Sight_200.jar Sight_212.bin Sight_310_installer.jar Sight_320_installer.jar Specific_range.tjar jsight: symbolic link to `jSight' k2b/ kaks/ kgtests/ kochanczyk/ probal_0.1rc2_i386.deb probal-0.1rc2.tar.gz labnotes/ lapdog/ lcmets/ ldb/ lecb2dgeldb/ legend/ lhdfoundexpert/ libgorx/ README libhippo/ liblink/ librarian/ lindinglab/ LMG/ lmg: symbolic link to `LMG' lolipog/ ComplLiMment_P.ver0.6.1.5.tgz ComplLiMment_P.ver0.6.1.tgz FA_LOLIPOG_P.ver0.5.1.tgz FA_LOLIPOG_P.ver0.6.1.2.tgz FA_LOLIPOG_P.ver0.6.1.7.tgz readme-ComplLiMment_P.txt readme-FA_LOLIPOG_P.txt TABLE_OF_CONTENTS.txt LuGenD/ lugend: symbolic link to `LuGenD' mac5/ macroshack/ bootstrapper/ bootstrapper.xls Count/ Count.xls format_gel/ format_gel.xls make_structure/ make_structure.xls multiplex/ multiplex.xls PHARE/ haplotyper.xls PHARE.xls taqmanin/ taqmanin.xls tee_off/ tee_off.xls mahco/ MAMED/ camamed/ CAMAMED-master.zip gl300000.txt mat80.txt metaphlan_output/ metaphlan_p_file1_1.fq metaphlan_p_file1_2.fq metaphlan_p_file2_1.fq metaphlan_p_file2_2.fq metaphlan_p_file3_1.fq metaphlan_p_file3_2.fq SRA/ ERR688358 ERR688361 Docker-CAMAMED.zip gene_catalog.fasta gene_catalog.fasta.gz MetaGe.zip metaphlan database/ mpa_v20_m200.md5 mpa_v20_m200.tar nucleotide.fasta pfile1.fastq pfile1.fastq.gz pfile2.fastq pfile2.fastq.gz protein.fasta mamed: symbolic link to `MAMED' Tabriz-uni/ PSh7_2_HWTTGDSXX_L3_1.fq.gz PSh7_2_HWTTGDSXX_L3_2.fq.gz TOR-commands mappingapi/ javaDocs.rar mappingAPI2.jar third-party-lib.rar massxpert/ matepred_hos/ matrix/ mattree/ mavric/ maxcontigprob/ mbcb/ mbcbg/ mbetoolbox/ archive/ mbetoolbox_v1.01a.zip mbetoolbox_v1.01b.zip mbetoolbox_v1.02.zip index.html LatestVersionTag mbetoolbox_logo.gif README mbi-score/ mblectures/ MBRC/ mbrc: symbolic link to `MBRC' mcldict/ m-cs/ mcsnp/ mdt/ medliner/ meltsim/ contrib/ nordita-meltsim-20050119.tar.gz COPYING meltsim-1.99.0.tar.gz meltsim-win-1-0b2-source.tar.gz meltsim-win-1-0b2.zip metabasis/ metabosim/ metals/ metaquant/ mfoldinterface/ mfoldinterface1-18.exe mfoldinterface.exe obtainmfold.exe obtainmfold.pl micheckout/ microarrayrus/ MicroarrayRUS_Release1_07072011.zip MicroarrayRUS_UserGuide.pdf Microarray _ US Users Guide_2013Revision.pdf microcirc/ A tutorial guide to ImageJ and Vessel_width plug-in.pdf tutorial-2012_09_27.pdf Vessel_width.jar microsatellite/ mirap/ mirfinder/ mitsbiotech/ mlpercep/ mmr/ mobbiotools/ modmap3d/ molekel/ molekel-5.0.0-alpha-FC5-SuSE10-20061113.tar.gz molekel-5.0.0-alpha-FC5-SUSE10-20061201.tar.bz2 molekel-5.0.0-alpha-FC5-SuSE10-20061311.tar.gz molekel-5.0.0-alpha-MacIntel-20061113.dmg.zip molekel-5.0.0-alpha-MacIntel-20061201.dmg.zip molekel-5.0.0-alpha-WIN-20061113.exe molekel-5.0.0-alpha-win-20061201.exe molekel-5.0.0-alpha-WIN-20061311.exe molekel_5_1_1_linux_x86_glibc_2_4.tar.gz molekel_5_1_1_MacOS_Intel.dmg.zip molekel_5_1_1_MacOS_PPC.dmg.zip molekel_5_1_1_win.exe molekel_5.1_beta_Linux_x86_glibc2_4.tar.gz molekel_5.1_beta_MacOSX_intel.dmg.tar.gz molekel_5.1_beta_MacOSX_Intel.dmg.zip molekel_5.1_beta_win.exe molekel_5_1_flash_presentations.zip molekel_5_1_flash_tutorials.zip molekel_5_1_linux_x86_glibc2_4.tar.gz molekel_5_1_MacOSX_Intel_.dmg.zip molekel_5_1_MacOSX_Intel.dmg.zip molekel_5_1_MacOSX_PPC.dmg.zip molekel_5_1_win.exe molekel_5_2_0_linux_x86_glibc_2_4.tar.gz molekel_5_2_0_win.exe molekel_5_3_0_linux_x86_32.tar.gz molekel_5_3_0_linux_x86_64.tar.gz molekel_5_3_0_win32.exe molekel_5_3_0_win.exe molekel_5_linux_x86_glibc-2.3_patch.tar.gz molekel_5_MacOSX_Intel.dmg.zip molekel_5_MacOSX_PPC.dmg.zip Molekel5-MAC-PPC-20061021.dmg.zip molekel_5_SuSE10_FC5_x86.tar.gz molekel_5_win.exe molekel_demo_avi.zip molekel_demo_videos_ogg.tar.gz molekel_dev_mac_intel_061009.dmg.gz molekel_MacOS_5_2_0_i386.dmg.zip molekel_MacOS_5_2_0_ppc.dmg.zip molekel_MacOS_5_3_0_i386.dmg.zip molekel_MacOSX_5_3_0_i386.dmg.zip molekel_sample_data.zip molekel_win_dev_060928.exe molekel_win_dev_061005.exe openbabel_patch_MacOSX_Intel.tar.gz openbabel_patch_MacOSX_PPC.tar.gz molslidesupport/ moltalk/ MolTalk-1.0a.zip MolTalk-1.2.zip MolTalk-VERSION_1_0a.tar.gz molvis/ molvis-list/ motiffreq/ motif.freq.pl shuffle.pl mpia/ mqtl/ metaqtl_1.0.zip metaqtl_1.1.1.zip metaqtl_1.1.2.zip metaqtl_1.1.zip metaqtl.jar mrat/ msareveal/ msatfinder/ gpl.txt HEARG4.gbk HEAR.gbk msatfinder msatfinder.rc README.txt mtrna-seq/ mugen/ mugen-20020102.tgz mugen-20020403.tgz mugen-20021107.tgz mugen-20030908.tgz mugen-data-20021107.tgz mutaprime/ Mutagenesis_Primer_Generator.zip mutationmaker/ mybioinformatic/ nanostr-splice/ NAPID/ napid: symbolic link to `NAPID' ncbi2rdf/ ConfigFiles.rar examples.rar JavaDoc.rar NCBI2RDF.jar RDFSchema.rdf README.TXT neobio/ nestec/ netsplitter/ netsplitter_V1.2.3.zip netsplitter_V1.2.4.zip Netsplitter_V1.2.zip netsplitter_V1.3.1.zip netsplitter_V1.3.3.zip nettab/ neurominer/ newbio/ NNRLE/ nnrle: symbolic link to `NNRLE' no3cogp/ NutriGKB-x/ nutrigkb-x: symbolic link to `NutriGKB-x' oeil-couleur/ cvs-1.11-win-full.zip dossier-formats.zip dossier-sgml.zip fot2pdf-r102.zip installation_oeil-couleur.txt presentation.ppt.zip presentation-rasmol.zip presentation-videos.zip ssh-1.2.14-win32bin.zip oligocounter/ oligofaktory/ omega/ ontap/ ontologizer/ openaccessindia/ openbns/ openclinica/ openlims/ openmicrobio/ openmmsusers/ opennotebook/ openphi/ operon/ orffinder2008/ orlania/ osprai/ owl/ ox2bioinfo/ p53/ paaapa/ pamsa/ parallelsearch/ paraprobe/ PartiGene/ annot8r_blast2GO_0.3.tar.gz annot8r_physprop.tar.gz PartiGeneV2.2.tar.gz prot4EST_2.1.1.tar.gz partigene: symbolic link to `PartiGene' trace2dbest_2.1.1.tar.gz WebPartiGene.tar.gz Pastel/ pastel: symbolic link to `Pastel' patristic/ Patristic-example.zip Patristic-src.tar.gz Patristic-src.zip Patristic.tar.gz Patristic.zip pcalc/ PCalc.EXE Pcalc_Pascal_source_code.zip PCalc.zip pcb2png/ pcb2png.tar.gz pcgdb/ pdbeditor/ PDBEditor.jar SourcePDBEditorFix080528.zip pdbHighlight/ LATEST-1.1.0 pdbHighlight/ pdbHighlight-1.1.0.tar.gz Data/ dir.des.scop.txt_1.65 dir.des.scop.txt_1.71 pdbHighlight.php wget_domain_data.plx.log NOTES pdbHighlight.php pdbHighlight.php ras_script README readme.html scopHighlight_using_flat_file.plx scopHighlight_using_SCOP_RDB.plx pdbHighlight.tar.gz wget_domain_data.plx README rsync_single_PDB_by_code.plx pdbhighlight: symbolic link to `pdbHighlight' pdbtools/ pdbwiki/ pdm/ peakanalyzer/ PeakAnalyzer_1.0.tar.gz PeakAnalyzer_1.3.tar.gz PeakAnalyzer_1.4.tar.gz PeakAnalyzer.tar.gz PeakAnnotator_Cpp_1.0.tar.gz PeakAnnotator_Cpp_1.3.tar.gz PeakAnnotator_Cpp_1.4.tar.gz PeakAnnotator_Cpp.tar.gz PeakAnnotator_Java_1.0.tar.gz PeakAnnotator_Java_1.3.tar.gz PeakAnnotator_Java_1.4.tar.gz PeakAnnotator_Java.tar.gz PeakSplitter_Cpp_1.0.tar.gz PeakSplitter_Cpp.tar.gz PeakSplitter_Java_1.0.tar.gz PeakSplitter_Java.tar.gz pecop/ ncbi.tar.gz penicep/ perlkob/ pes/ pfpusingpp/ pga/ pgetoolbox/ addins/ linux/ ms.mexglx mStirling.mexglx solaris/ src/ ms/ build.m ms.c ms.h rand2t.c streec.c mStirling.c win32/ ms.dll mStirling.dll Pharprotics/ pharprotics: symbolic link to `Pharprotics' phenoman/ phenotyper/ MobilePhenotyping_2012.zip PDA-Software_src.zip PDA-Software.zip PhenotyperWebsite.zip PhenotypingSchemeComposer_src.zip PhenotypingSchemeComposer.zip philnimbus/ phoenix/ phoenix_1_0_0_0.zip phpdas/ phplabdb/ phplabware/ phpphylotree/ phpphylotree-0.1.tar.gz phpphylotree-0.2.tar.gz phyloflow/ phylogeorec/ phylometaprot/ phylometaprot.zip phylomine/ pie/ pinkthing/ pipeline/ pips/ PIPS-1.1.1.tar.gz PIPS-1.1.2.tar.gz pips.tar.gz samples.tar.gz transposaseDB.tar.gz PM-BLAST/ pm-blast: symbolic link to `PM-BLAST' pme/ pocketsample/ ISPyB_PocketSample-1.2.0.0.zip poemexons/ EIDTUTR10982.seded README_10982.txt tutr348.seded pogo/ poly/ polymal/ poly-0.0.7.tar.gz poly-0.1.1.tar.gz poly.README polyxmass/ poolfit/ populations/ populations-1.2.29.tar.gz populations-1.2.30beta2.exe populations-1.2.30beta.exe populations-1.2.30beta.tar.gz populations-1_2_30.exe populations-1.2.30.tar.gz populations-1.2.32.zip populations.exe portrait/ ppmmd/ pqcalc/ preclinicaldm/ prep/ PREPv1-0.pl primer3-int-grp/ PrimerMatch/ PrimerMatch.tar.gz primermatch: symbolic link to `PrimerMatch' primerpy/ primerx/ PriMux/ primux: symbolic link to `PriMux' proalagar/ project/ prometheus/ prompt/ proplus/ proscurator/ proteincharge/ proteopedialist/ proteosuite/ prp8pir/ pyannhyb/ pymsxml/ PyMsXML_Complete_0.5.0.zip PyMsXML_Complete_0.5.2.zip PyMsXML_Complete_0.5.3.zip PyMsXML_Complete_0.5.4.zip PyMsXML_Complete.zip PyMsXML_Scripts_0.5.0.zip PyMsXML_Scripts_0.5.2.zip PyMsXML_Scripts_0.5.3.zip PyMsXML_Scripts_0.5.4.zip PyMsXML_Scripts.zip qassembler/ qcscreen/ qpycr/ qpycr.zip qPyCR.zip radviz/ rasmol/ rasmol-2.6b2-linux-i386.tar.gz README rbp/ RDFBuilder/ aewrapperConfig.xml JavaDoc.rar mage-rdf-model-empty.obm mage-rdf-model-empty.owl RDFbuilder.jar README.TXT rdfbuilder: symbolic link to `RDFBuilder' rdfscape/ analysisContexts04.tgz context-pathwaycommons-0_2_1.tgz context-pathwaycommons-HumanCyc-local-interaction.tgz dist04_1.tgz dist_0_4_2_JVM1_5.tgz dist_0_4_2_JVM1_6.tgz dist04.tgz RDFScape011.jar rdfscape-0_2_0.tgz RDFScape04_1.tgz RDFScape_0_4_2-JVM1_5.tgz RDFScape_0_4_2-JVM1_6.tgz RDFScape04.tgz RDFScape-alpha0.1.jar RDFScape.jar RDFScapejar-0_2_1.gz RDFScapejar-2_0_1.gz rdfScapeTestContext01.tar.gz vizmap-0_2_1.tgz realignerv/ reannotate/ REannotate.tar.gz refgene/ regulator/ reslink/ med2bib.pl Reveal/ reveal: symbolic link to `Reveal' reza/ rnai/ rnawebservices/ rptool/ r-repo/ rv-gdt/ rv-tdt/ s2s/ 2.0/ 2.0.1/ CHANGELOG paradise.jar s2s.jar 2.0.2/ CHANGELOG launch_S2S_for_Windows.bat paradise.jar s2s.jar updater.jar 2.0.3/ S2S_2.0.3.zip 2.0.4_beta1/ CHANGELOG paradise.jar s2s.jar updater.jar 2.0_RC1/ S2S_2.0_RC1.tar.gz 2.0_RC2/ CHANGELOG paradise.jar s2s.jar tertiary_data.zip 2.0_RC3/ CHANGELOG S2S_2.0_RC3.tar.gz S2S_2.0.zip updates.xml versions.xml sachbinfo/ sammd/ sastra/ satellite/ sbetoolbox/ sbml-iea/ scan/ scol/ goToWebsite.php scriptome/ searchpattool/ example&doc/ bestzssup.txt bestzstot.txt final-results-with-pvalue.txt finfo.txt fproba.txt frev.txt ftot.txt patt-cons-mic-tot.txt patt-cons-mic.txt patt-profiles-tot.txt patt-profiles.txt patt-rev-com-tot.txt patt-rev-com.txt patt-similarity_JMP.JMP patt-similarity-tot.txt patt-similarity.txt promospo0abs.txt random-scores.txt readme-searchpattool-doc.pdf resA.txt resC.txt resG.txt resT.txt Rscript.R runreport.txt sites-for-logo-tot.txt sites-for-logo.txt sites-positions-tot.txt sites-positions.txt programs/ compute_pvalue.exe search_best_random_scores.exe searchpattool.exe select-best-zs-sup.exe select-best-zs-tot.exe sources/ compute_pvalue.cpp listgen.h search_best_random_scores.cpp searchpattool.cpp select-best-zs-sup.cpp select-best-zs-tot.cpp slist.cpp slist.h utilities2.cpp utilities2.h seks/ seqdoc/ seqdoc_v1.0.pl seqdoc_v1.2.pl seqext/ seqlink/ seqplotter/ seqPlotter: symbolic link to `seqplotter' sequencePCTool/ sequencepctool: symbolic link to `sequencePCTool' sequerome/ SeWeR/ sewer-3.0.tar.gz sewer: symbolic link to `SeWeR' signature/ signetview/ sigpred/ simped/ simplegrid/ sitefind/ SiteFind.zip skim/ slim/ slritools/ SMS/ sms2/ sms_v_1_1.zip sms.zip sms: symbolic link to `SMS' sna/ SNA-1.0.tar.gz SNA.tar.gz snba/ sneaser/ genes-UCSC.tar.gz HSapiens-nr.tar.gz sneaser-updated.zip sneaser.zip snpsel/ KIAA0960.zip KIAA1754L.zip SNPsel.doc SNPsel_KIAA0960.doc SNPsel_KIAA0960.pdf.filepart SNPsel.pdf SNPsel_Source.zip SNPsel.txt SNPsel.zip snp-tools-excel/ socr/ softwaretesting/ somsvd/ spadeweb/ spatkin/ spider/ SPMS/ spms: symbolic link to `SPMS' spower/ squiki/ ssake/ ssake_v3-0.tar.gz ssake_v3-2-1-tar.gz ssake_v3-2_current.tar.gz ssake_v3-2.tar.gz ssml/ sspred/ sStu/ sst1_doc.zip sst1.jar sst1_src.zip sstu: symbolic link to `sStu' stanley/ stemnet/ storehere/ strainer/ Strainer-0.9.3b.jar Strainer-0.9.3b-src.jar Strainer-0.9.4b.jar Strainer-0.9.4b-src.jar strainer-r19.jar strainer-r23.jar strap/ hallo.tar.gz straputils/ structurekit/ sujamvc/ superimposer/ supermarket/ SurpResi/ surpresi: symbolic link to `SurpResi' svdfuzzyk/ ClusteringCode.tar.gz sweblast/ examples.zip SWeBLAST.zip swift/ sysbio/ tagsnper/ taxinspector/ TaxInspectorInstaller_0.1b3.jar taxonomy/ tbdtdb/ tcwt/ t-CWT.2.00.zip t-CWT.2.01.zip t-CWT.example.ERP.data.zip texmed/ README.txt texmed-2.0.6.tar.gz texmed-2.0.7.tar.gz textknowledge/ test tfreg/ thailand/ thesilverlining/ tpe-lfb/ trabas/ tracegd/ tracegd1.0.zip traceviewer/ treeqtl/ trl/ troll/ tutorial/ ucd-medicago/ unidplot/ UniDPlot_Mac_1.2.1.zip UniDPlot_Mac.zip UniDPlot_Win_1.2.1.zip UniDPlot_Win.zip UniGeneDLST/ dlst.tgz dlst_v0.9.tgz unigenedlst: symbolic link to `UniGeneDLST' vear/ virusbanker/ visual/ vlinux/ 2.0a2/ VLinux_2.0.i686-0.0.8.iso latest: symbolic link to `2.0a2' Readme.txt vlinux.iso volcanicworm/ vplg/ Wasabi/ wasabi: symbolic link to `Wasabi' WAX/ wax: symbolic link to `WAX' wcurve/ html.tar.gz webfog/ fog.zip WinBLAST/ Setup-0.1.4.exe Setup-0.1.5.exe Setup.exe winblast: symbolic link to `WinBLAST' WinBLAST-0.1.1a-bin.zip WinBLAST-0.1.1a-src.zip WinBLAST-0.1.2a-bin.zip WinBLAST-0.1.2a-src.zip Winblast-0.1.5-src.zip WinBLAST-0.1a-src.zip WinBLAST-0.1a.zip wrair/ genecite/ GeneCite.jar GeneCiteUserGuide.doc genes.txt pathwaydatabaseGC1.ldb pathwaydatabaseGC1.mdb SampleData1.txt SampleDatasymbol.txt terms.txt testUnists.txt genecite.zip xacg/ x-chem/ xml2mat/ XML4MAT.zip yamap/ yapp/ readme yapp.tar.gz yeastsnodb/ yinteraction/ Yinteraction_source.zip Yinteraction.zip yngs/ YNGSv1_0.tar.gz YNGSv1_1.tar.gz yourlabdata/ yucleosome/ Yucleosome_bin.zip Yucleosome_src.zip zEST/ zest: symbolic link to `zEST' zps/