###################################################################################
#	DENSERM_P: A package to DEtect Negative SElection on Recurrent Mutations
#			(almost exclusively via Perl modules and scripts).
#	Version 0.3: Copyright (C) 2012 Kiyoshi Ezawa
#	Version 0.5: Copyright (C) 2013 Kiyoshi Ezawa
#
#    This package is free software: you can redistribute it and/or modify
#    it under the terms of the GNU General Public License as published by
#    the Free Software Foundation, either version 3 of the License, or
#    (at your option) any later version.
#
#    This package is distributed in the hope that it will be useful,
#    but WITHOUT ANY WARRANTY; without even the implied warranty of
#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#    GNU General Public License for more details.
#
#    You should have received a copy of the GNU General Public License, "GNU_GPL.txt",
#    along with this package.  If not, see <http://www.gnu.org/licenses/>.
#
#    The author can be contacted by e-mailing to <kezawa dot ezawa3 at gmail dot com>
#    (replace " dot " and " at " with "." and "@", respectively).
###################################################################################
#
#

<< README file for the "../Published/" directory. >>

Currently, it contains the PDF of the article that we published in 2013 (Ezawa, Landan, and Graur 2013),
as well as their supplementary files excluding the software packages(, which is available 
elsewhere in this Bioinformatics.org FTP repository (https://www.bioinformatics.org/ftp/pub/denserm/)).

Here are the names and brief descriptions of the available files:

* readme.Published.txt
	This file.

* ezawa_et_al2013_BMCGenet14_37.pdf
	PDF of the main article (Ezawa, Landan, and Graur 2013);

* ezawa_et_al2013_BMCGenet14_37_ADD1.pdf
	PDF of the Additional file 1 of (Ezawa, Landan, and Graur 2013);

* ezawa_et_al2013_BMCGenet14_37_ADD2.pdf
	PDF of the Additional file 2 of (Ezawa, Landan, and Graur 2013).


< OPEN SOURCE: >
 
Currently,
all files under this directory (i.e., "../Published/") are available under the terms of the 

 Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), 

 which permits unrestricted use, distribution, and reproduction in any medium, 
 PROVIDED THAT you give appropriate credit to
 the original author (K. Ezawa) and the source (the location (URL) of the file(s) you obtained and used),
provided the original works (available at  https://doi.org/10.1186/1471-2156-14-37) are properly cited.


--------------------------------------------------------------------------------------------------

[ Reference ]

  * Ezawa K, Landan G, and Graur D. 2013. "Detecting negative selection on recurrent mutations using gene genealogy." BMC Genetics 14:37; DOI: 10.1186/1471-2156-14-37.