GTTMatch demo application is running Smith Waterman algorithm to do string sequence macthing.
This algorithm has been used in bio-informatics area.

To run this demo application, just click run.bat.

The following is sample parameters:

Choose gpcu.fsa for both input files, 
Choose output.txt for output file,
Strings 3
Strings 100

The program will compare the first 3 strings against 100 strings in the 
gpcu.fsa file. The time it takes to complete the string comparison
is displayed in the DOS window.


