java -classpath lib/apptools-platform-1.5.0.jar net.sf.apptools.Setup setup/setup_piecemaker.cfg
java -classpath lib/apptools-platform-1.5.0.jar net.sf.apptools.Setup setup/setup_selectfrags.cfg
java -classpath lib/apptools-platform-1.5.0.jar net.sf.apptools.Setup setup/setup_addsubs.cfg
java -classpath lib/apptools-platform-1.5.0.jar net.sf.apptools.Setup setup/setup_filtervars.cfg
java -classpath lib/apptools-platform-1.5.0.jar net.sf.apptools.Setup setup/setup_probemaker.cfg