Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2001/03/01 11:41:04)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE crp0.s (nucleotide)
	Last updated on Thu Mar  1 08:28:36 2001
	Database contains 18 sequences, 1890 residues

	Scores for positive and reverse complement strands are combined.

	MOTIFS meme.crp0.tcm.4.sunsparcsolaris.html (nucleotide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    19   TGTGAGCGAGGTCACACTT
	  2    11   GTGGAATTGTT
	  3     8   CGGCGGGG

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1     2
	----- ----- -----
	   2   0.28
	   3   0.33  0.30
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.281 C 0.222 G 0.229 T 0.267 


SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
gale 0.00011 105
D A ?
lac 0.00041 105
D A ?
male 0.001 105
D A ?
tnaa 0.001 105
D A ?
malt 0.0019 105
D A ?
ara 0.0027 105
D A ?
ilv 0.004 105
D A ?
ce1cg 0.0098 105
D A ?
uxu1 0.023 105
D A ?
deop2 0.066 105
D A ?
ompa 0.084 105
D A ?
cya 0.086 105
D A ?
tdc 0.13 105
D A ?
bglr1 0.16 105
D A ?
crp 0.21 105
D A ?
malk 0.24 105
D A ?
pbr322 0.27 105
D A ?
trn9cat 9.4 105


SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
gale 0.00011

-2
+1
S A ?
lac 0.00041

+1
+2
-2
S A ?
male 0.001

+1
+3
S A ?
tnaa 0.001

+1
-2
S A ?
malt 0.0019

-1
S A ?
ara 0.0027

+1
S A ?
ilv 0.004

+3
+1
S A ?
ce1cg 0.0098

-1
+1
S A ?
uxu1 0.023

+2
S A ?
deop2 0.066

+1
-1
S A ?
ompa 0.084

+1
S A ?
cya 0.086

-1
S A ?
tdc 0.13

+1
S A ?
bglr1 0.16

+1
S A ?
crp 0.21

+1
S A ?
malk 0.24

-1
S A ?
pbr322 0.27

-1
S A ?
trn9cat 9.4

SCALE
| | | | |
1 25 50 75 100


SECTION III: ANNOTATED SEQUENCES


gale
S D ?


LENGTH = 105 COMBINED P-VALUE = 6.33e-06 E-VALUE = 0.00011
DIAGRAM: 30-[-2]-3-[+1]-42
                                   [-2]          [+1]
                                   1.8e-06       6.6e-07
                                   AACAATTCCAC   TGTGAGCGAGGTCACACTT
                                   +++++++++++   +++  ++++++++++++++
1    GCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCATGTCACACTTTTCGCATCTTTG



lac
S D ?


LENGTH = 105 COMBINED P-VALUE = 2.26e-05 E-VALUE = 0.00041
DIAGRAM: 11-[+1]-46-[+2]-7-[-2]
                [+1]
                9.2e-06
                TGTGAGCGAGGTCACACTT
                ++++++  ++ ++++ +++
1    AACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTG

      [+2]              [-2]
      1.8e-06           6.6e-07
      GTGGAATTGTT       AACAATTCCAC
      +++++++++++       +++++++++++
76   TGTGGAATTGTGAGCGGATAACAATTTCAC



male
S D ?


LENGTH = 105 COMBINED P-VALUE = 5.60e-05 E-VALUE = 0.001
DIAGRAM: 16-[+1]-5-[+3]-57
                     [+1]                    [+3]
                     1.4e-06                 1.5e-05
                     TGTGAGCGAGGTCACACTT     CGGCGGGG
                     +++ +  +++ ++++++++     ++++++++
1    ACATTACCGCCAATTCTGTAACAGAGATCACACAAAGCGACGGTGGGGCGTAGGGGCAAGGAGGATGGAAAGAGG



tnaa
S D ?


LENGTH = 105 COMBINED P-VALUE = 5.68e-05 E-VALUE = 0.001
DIAGRAM: 73-[+1]-1-[-2]-1
                                                                              [+
                                                                              1.
                                                                              TG
                                                                              ++
1    TTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTG

     1]                [-2]
     0e-05             2.4e-06
     TGAGCGAGGTCACACTT AACAATTCCAC
     ++++ +   +++++ ++ +++++++++++
76   TGATTCGATTCACATTTAAACAATTTCAGA



malt
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.08e-04 E-VALUE = 0.0019
DIAGRAM: 40-[-1]-46
                                             [-1]
                                             6.6e-07
                                             AAGTGTGACCTCGCTCACA
                                             ++++++++++  + +++++
1    GATCAGCGTCGTTTTAGGTGAGTTGTTAATAAAGATTTGGAATTGTGACACAGTGCAAATTCAGACACATAAAAA



ara
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.49e-04 E-VALUE = 0.0027
DIAGRAM: 57-[+1]-29
                                                              [+1]
                                                              2.4e-08
                                                              TGTGAGCGAGGTCACACT
                                                              +++++ ++ +++++++++
1    GACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCAGAAAAGTCCACATTGATTATTTGCACGGCGTCACACT

     
     
     T
     +
76   TTGCTATGCCATAGCATTTTTATCCATAAG



ilv
S D ?


LENGTH = 105 COMBINED P-VALUE = 2.23e-04 E-VALUE = 0.004
DIAGRAM: 4-[+3]-29-[+1]-45
         [+3]                                 [+1]
         7.0e-06                              1.9e-05
         CGGCGGGG                             TGTGAGCGAGGTCACACTT
         ++++++++                             +++++++ ++  + +++++
1    GCTCCGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAAACGTGATCAACCCCTCAATTTTCCCTTTGCTGAAA



ce1cg
S D ?


LENGTH = 105 COMBINED P-VALUE = 5.44e-04 E-VALUE = 0.0098
DIAGRAM: 16-[-1]-28-[+1]-23
                     [-1]                                           [+1]
                     5.2e-06                                        5.3e-07
                     AAGTGTGACCTCGCTCACA                            TGTGAGCGAGGT
                     +++++++ +++++ +++++                            ++++++++ + +
1    TAATGTTTGTGCTGGTTTTTGTGGCATCGGGCGAGAATAGCGCGTGGTGTGAAAGACTGTTTTTTTGATCGTTTT

     
     
     CACACTT
     +++++++
76   CACAAAAATGGAAGTCCACAGTCTTGACAG



uxu1
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.25e-03 E-VALUE = 0.023
DIAGRAM: 9-[+2]-85
              [+2]
              6.6e-07
              GTGGAATTGTT
              +++++++++++
1    CCCATGAGAGTGAAATTGTTGTGATGTGGTTAACCCAATTAGAATTCGGGATTGACATGTCTTACCAAAAGGTAG



deop2
S D ?


LENGTH = 105 COMBINED P-VALUE = 3.64e-03 E-VALUE = 0.066
DIAGRAM: 9-[+1]-31-[-1]-27
              [+1]                                              [-1]
              1.9e-06                                           1.3e-06
              TGTGAGCGAGGTCACACTT                               AAGTGTGACCTCGCTC
              +++++ ++++ ++ ++ ++                               ++++++++ +++ +++
1    AGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATC

     
     
     ACA
     +++
76   GAAGTGTGTTGCGGAGTAGATGTTAGAATA



ompa
S D ?


LENGTH = 105 COMBINED P-VALUE = 4.67e-03 E-VALUE = 0.084
DIAGRAM: 50-[+1]-36
                                                       [+1]
                                                       8.3e-07
                                                       TGTGAGCGAGGTCACACTT
                                                       + +++  +++ ++++++++
1    GCTGACAAAAAAGATTAAACATACCTTATACAAGACTTTTTTTTCATATGCCTGACGGAGTTCACACTTGTAAGT



cya
S D ?


LENGTH = 105 COMBINED P-VALUE = 4.75e-03 E-VALUE = 0.086
DIAGRAM: 49-[-1]-37
                                                      [-1]
                                                      8.5e-06
                                                      AAGTGTGACCTCGCTCACA
                                                      + ++++ + ++ +++++++
1    ACGGTGCTACACTTGTATGTAGCGCATCTTTCTTTACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGA



tdc
S D ?


LENGTH = 105 COMBINED P-VALUE = 7.26e-03 E-VALUE = 0.13
DIAGRAM: 78-[+1]-8

        [+1]
        6.7e-06
        TGTGAGCGAGGTCACACTT
        ++++ + + ++++ +++++
76   TAATTTGTGAGTGGTCGCACATATCCTGTT



bglr1
S D ?


LENGTH = 105 COMBINED P-VALUE = 8.63e-03 E-VALUE = 0.16
DIAGRAM: 78-[+1]-8

        [+1]
        4.0e-06
        TGTGAGCGAGGTCACACTT
        +++++++  +++++ + ++
76   AACTGTGAGCATGGTCATATTTTTATCAAT



crp
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.14e-02 E-VALUE = 0.21
DIAGRAM: 65-[+1]-21
                                                                      [+1]
                                                                      2.5e-06
                                                                      TGTGAGCGAG
                                                                      +++ +  +++
1    CACAAAGCGAAAGCTATGCTAAAACAGTCAGGATGCTACAGTAATACATTGATGTACTGCATGTATGCAAAGGAC

     
     
     GTCACACTT
     ++++++ ++
76   GTCACATTACCGTGCAGTACAGTTGATAGC



malk
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.31e-02 E-VALUE = 0.24
DIAGRAM: 60-[-1]-26
                                                                 [-1]
                                                                 2.2e-05
                                                                 AAGTGTGACCTCGCT
                                                                 +++ ++++ ++ +++
1    GGAGGAGGCGGGAGGATGAGAACACGGCTTCTGTGAACTAAACCGAGGTCATGTAAGGAATTTCGTGATGTTGCT

     
     
     CACA
      +++
76   TGCAAAAATCGTGGCGATTTTATGTGCGCA



pbr322
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.52e-02 E-VALUE = 0.27
DIAGRAM: 52-[-1]-34
                                                         [-1]
                                                         6.7e-06
                                                         AAGTGTGACCTCGCTCACA
                                                           ++++++ ++  ++++++
1    CTGGCTTAACTATGCGGCATCAGAGCAGATTGTACTGAGAGTGCACCATATGCGGTGTGAAATACCGCACAGATG



trn9cat
S D ?


LENGTH = 105 COMBINED P-VALUE = 5.24e-01 E-VALUE = 9.4
DIAGRAM: 105



Debugging Information



CPU: nbcr2
Time 0.080000 secs.

mast meme.crp0.tcm.4.sunsparcsolaris.html -stdout


Button Help

E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
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