Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2001/03/01 11:41:04)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE lipocalin.s (peptide)
	Last updated on Thu Mar  1 08:28:42 2001
	Database contains 5 sequences, 903 residues

	MOTIFS meme.lipocalin.zoops.4.sunsparcsolaris.html (peptide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    26   GACPAVRPMRNFDIQKFAGTWHEIAK
	  2    20   NNVFWILDTDYKNYLIQYMC
	  3    23   YDPDKKGHQDHVWILSRSKVLEG

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1     2
	----- ----- -----
	   2   0.25
	   3   0.20  0.15
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058 
	L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064 
	W 0.013 Y 0.033 


SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
BBP_PIEBR 6.4e-59 173
D A ?
ICYA_MANSE 2.1e-58 189
D A ?
RETB_BOVIN 1.5e-27 183
D A ?
LACB_BOVIN 2.3e-23 178
D A ?
MUP2_MOUSE 4.5e-23 180


SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
BBP_PIEBR 6.4e-59

1
2
3
S A ?
ICYA_MANSE 2.1e-58

1
2
3
S A ?
RETB_BOVIN 1.5e-27

1
2
S A ?
LACB_BOVIN 2.3e-23

1
2
S A ?
MUP2_MOUSE 4.5e-23

1
2
SCALE
| | | | | | | |
1 25 50 75 100 125 150 175


SECTION III: ANNOTATED SEQUENCES


BBP_PIEBR
S D ?


LENGTH = 173 COMBINED P-VALUE = 1.28e-59 E-VALUE = 6.4e-59
DIAGRAM: 5-[1]-64-[2]-1-[3]-34
          [1]
          1.5e-24
          GACPAVRPMRNFDIQKFAGTWHEIAK
          ++++++++++++++++++++++++++
1    NVYHDGACPEVKPVDNFDWSNYHGKWWEVAKYPNSVEKYGKCGWAEYTPEGKSVKVSNYHVIHGKEYFIEGTAYP

                         [2]                  [3]
                         1.2e-19              1.8e-27
                         NNVFWILDTDYKNYLIQYMC YDPDKKGHQDHVWILSRSKVLEG
                         ++++++++++++++++++++ +++++++++++++++++++++++
76   VGDSKIGKIYHKLTYGGVTKENVFNVLSTDNKNYIIGYYCKYDEDKKGHQDFVWVLSRSKVLTGEAKTAVENYLI



ICYA_MANSE
S D ?


LENGTH = 189 COMBINED P-VALUE = 4.14e-59 E-VALUE = 2.1e-58
DIAGRAM: 6-[1]-67-[2]-1-[3]-46
           [1]
           3.0e-24
           GACPAVRPMRNFDIQKFAGTWHEIAK
           ++++++++++++++++++++++++++
1    GDIFYPGYCPDVKPVNDFDLSAFAGAWHEIAKLPLENENQGKCTIAEYKYDGKKASVYNSFVSNGVKEYMEGDLE

                             [2]                  [3]
                             4.6e-20              6.1e-27
                             NNVFWILDTDYKNYLIQYMC YDPDKKGHQDHVWILSRSKVLEG
                             + ++++++++++++++++++ +++++++++++++++++++++++
76   IAPDAKYTKQGKYVMTFKFGQRVVNLVPWVLATDYKNYAINYNCDYHPDKKAHSIHAWILSKSKVLEGNTKEVVD



RETB_BOVIN
S D ?


LENGTH = 183 COMBINED P-VALUE = 2.90e-28 E-VALUE = 1.5e-27
DIAGRAM: 3-[1]-71-[2]-63
        [1]
        2.5e-19
        GACPAVRPMRNFDIQKFAGTWHEIAK
        +++++++++++++ ++++++++++++
1    ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVG

                              [2]
                              3.7e-17
                              NNVFWILDTDYKNYLIQYMC
                              + ++++++++++++++++++
76   TFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLDGTCADSYSFVFARDPSGFSPEVQK



LACB_BOVIN
S D ?


LENGTH = 178 COMBINED P-VALUE = 4.54e-24 E-VALUE = 2.3e-23
DIAGRAM: 14-[1]-64-[2]-54
                   [1]
                   3.1e-18
                   GACPAVRPMRNFDIQKFAGTWHEIAK
                   +++++++++++ ++++++++++++++
1    MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQ

                                  [2]
                                  1.5e-13
                                  NNVFWILDTDYKNYLIQYMC
                                  ++++ +++++++ ++++++
76   KWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALE



MUP2_MOUSE
S D ?


LENGTH = 180 COMBINED P-VALUE = 8.92e-24 E-VALUE = 4.5e-23
DIAGRAM: 16-[1]-62-[2]-56
                     [1]
                     8.4e-17
                     GACPAVRPMRNFDIQKFAGTWHEIAK
                     ++++++++++++ +++++++++++++
1    MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFH

                                  [2]
                                  1.1e-14
                                  NNVFWILDTDYKNYLIQYMC
                                  +++++++++++++++++++
76   TVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKE


Debugging Information



CPU: nbcr2
Time 0.290000 secs.

mast meme.lipocalin.zoops.4.sunsparcsolaris.html -stdout


Button Help

E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
?
This information

Go to top