Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2001/03/01 11:41:04)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE INO_up800.s (nucleotide)
	Last updated on Thu Mar  1 08:28:30 2001
	Database contains 7 sequences, 5600 residues

	Scores for positive and reverse complement strands are combined.

	MOTIFS meme.INO_up800.oops.4.sunsparcsolaris.html (nucleotide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    12   TTCACATGCCGC
	  2    10   TCTGGCACAG
	  3    11   CAGCGGCACCA

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1     2
	----- ----- -----
	   2   0.32
	   3   0.16  0.44
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.281 C 0.222 G 0.229 T 0.267 


SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
CHO2 sequence of the region up... 1.1e-05 800
D A ?
INO1 sequence of the region up... 1.6e-05 800
D A ?
ACC1 sequence of the region up... 2.3e-05 800
D A ?
OPI3 sequence of the region up... 3.1e-05 800
D A ?
FAS1 sequence of the region up... 7.5e-05 800
D A ?
CHO1 sequence of the region up... 9e-05 800
D A ?
FAS2 sequence of the region up... 0.0012 800


SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
CHO2 1.1e-05

+3
+1
-2
S A ?
INO1 1.6e-05

-2
-3
-1
+1
S A ?
ACC1 2.3e-05

+1
+3
+2
S A ?
OPI3 3.1e-05

-2
+1
-3
S A ?
FAS1 7.5e-05

+2
+1
+3
S A ?
CHO1 9e-05

+3
+2
-2
+1
+1
S A ?
FAS2 0.0012

-2
+1
+3
SCALE
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
1 25 50 75 100 125 150 175 200 225 250 275 300 325 350 375 400 425 450 475 500 525 550 575 600 625 650 675 700 725 750 775 800


SECTION III: ANNOTATED SEQUENCES


CHO2
S D ?

sequence of the region upstream from YGR157W
LENGTH = 800 COMBINED P-VALUE = 1.62e-06 E-VALUE = 1.1e-05
DIAGRAM: 27-[+3]-315-[+1]-47-[-2]-378
                                [+3]
                                1.4e-07
                                CAGCGGCACCA
                                +++++++++++
1    ACCCTCTAACGCGAATAAAGCGAATGACAGCGGCACCATTAATATGGCGAAACTGCAATTACTACCTGAAAACCA

                                                          [+1]
                                                          5.2e-07
                                                          TTCACATGCCGC
                                                          +++ ++++++++
301  ATATATATTTTTGCCTTGGTTTAAATTGGTCAAGACAGTCAATTGCCACACTTTTCTCATGCCGCATTCATTATT

                                          [-2]
                                          2.9e-05
                                          CTGTGCCAGA
                                          +  +++++++
376  CGCGAAGTTTTCCACACAAAACTGTGAAAATGAACGGCGATGCCAGAAACGGCAAAACCTCAAATGTTAGATAAC



INO1
S D ?

sequence of the region upstream from YJL153C
LENGTH = 800 COMBINED P-VALUE = 2.35e-06 E-VALUE = 1.6e-05
DIAGRAM: 282-[-2]-78-[-3]-238-[-1]-55-[+1]-102

                                                              [-2]
                                                              1.8e-05
                                                              CTGTGCCAGA
                                                              +++ +++ ++
226  ACGTTGTATATGAAACGAGTAGTGAACGTTCGTACGATCTTTCACGCAGACATGCGACTGCGCCCGCCGTAGACC

                                                                           [-3]
                                                                           4.2e-
                                                                           TGGTG
                                                                            ++++
301  GTGACCTGGAAGCTCACCCTGCAGAGGAATCTCAAGCACAGCCTCCAGCATATGATGAAGACGATGAGGCCGGTG

     
     06
     CCGCTG
     ++++++
376  CCGATGTGCCCTTGATGGACAACAAACAACAGCTCTCTTCCGGCCGTACTTAGTGATCGGAACGAGCTCTTTATC

                        [-1]
                        4.2e-08
                        GCGGCATGTGAA
                        ++++++++++++
601  TGCGCTTCGGCGGCTAAATGCGGCATGTGAAAAGTATTGTCTATTTTATCTTCATCCTTCTTTCCCAGAATATTG

                [+1]
                1.3e-05
                TTCACATGCCGC
                +++++++++ ++
676  AACTTATTTAATTCACATGGAGCAGAGAAAGCGCACCTCTGCGTTGGCGGCAATGTTAATTTGAGACGTATATAA



ACC1
S D ?

sequence of the region upstream from YNR016C
LENGTH = 800 COMBINED P-VALUE = 3.30e-06 E-VALUE = 2.3e-05
DIAGRAM: 82-[+1]-92-[+3]-34-[+2]-559

            [+1]
            3.1e-07
            TTCACATGCCGC
            ++++++++++ +
76   TAAAATCTTCACATGGCCCGGCCGCGCGCGCGTTGTGCCAACAAGTCGCAGTCGAAATTCAACCGCTCATTGCCA

                                         [+3]
                                         2.1e-05
                                         CAGCGGCACCA
                                          ++++++++++
151  CTCTCTCTACTGCTTGGTGAACTAGGCTATACGCTCAATCAGCGCCAAGATATATAAGAAGAACAGCACTCCCAG

           [+2]
           7.4e-07
           TCTGGCACAG
           ++++++++++
226  TCGTATTCTGGCACAGTATAGCCTAGCACAATCACTGTCACAATTGTTATCGGTTCTACAATTGTTCTGCTCTCT



OPI3
S D ?

sequence of the region upstream from YJR073C
LENGTH = 800 COMBINED P-VALUE = 4.45e-06 E-VALUE = 3.1e-05
DIAGRAM: 185-[-2]-144-[+1]-163-[-3]-275

                                        [-2]
                                        7.4e-07
                                        CTGTGCCAGA
                                        ++++++++++
151  GTTAATCTGATCAACGCTACGCCGATGACAACGGTCTGTGCCAGATCTGGTTTTCCCCACTTATTTGCTACTTCC

                                            [+1]
                                            5.8e-06
                                            TTCACATGCCGC
                                            ++++ ++ ++ +
301  AACTCCGTCAGGTCTTCCACGTGGAACTGCCAAGCCTCCTTCAGATCGCTCTTGTCGACCGTCTCCAAGAGATCC

                                                                     [-3]
                                                                     1.6e-06
                                                                     TGGTGCCGCTG
                                                                     +++++++++ +
451  TGTGTATCGGGGACTTCTCTTAGAGTAGAAGCGTCTATAAACCCAGGTGGGACGACAGTAGTGATGGCGCCGCCG



FAS1
S D ?

sequence of the region upstream from YKL182W
LENGTH = 800 COMBINED P-VALUE = 1.08e-05 E-VALUE = 7.5e-05
DIAGRAM: 43-[+2]-41-[+1]-266-[+3]-417
                                                [+2]
                                                2.2e-05
                                                TCTGGCACAG
                                                ++ +++++ +
1    CCGGGTTATAGCAGCGTCTGCTCCGCATCACGATACACGAGGTGCAGGCACGGTTCACTACTCCCCTGGCCTCCA

                        [+1]
                        4.2e-08
                        TTCACATGCCGC
                        ++++++++++++
76   ACAAACGACGGCCAAAAACTTCACATGCCGCCCAGCCAAGCATAATTACGCAACAGCGATCTTTCCGTCGCACAA

                                                                             [+3
                                                                             2.0
                                                                             CAG
                                                                             + +
301  TTTTGGCATTTTTGGCATACTTTTTATCGATTGAACCATCTTCTCCAAACACTTTTCCTTTTTCCTTCTATTCTG

     ]
     e-05
     CGGCACCA
     +++ ++++
376  CAGGACCAACTAAAACTGGGTATATATATCATTATCTATATATATAAACGGCTTTCAACAAAGTTATAGGGGAAA



CHO1
S D ?

sequence of the region upstream from YER026C
LENGTH = 800 COMBINED P-VALUE = 1.29e-05 E-VALUE = 9e-05
DIAGRAM: 38-[+3]-103-[+2]-396-[-2]-42-[+1]-17-[+1]-149
                                           [+3]
                                           3.5e-05
                                           CAGCGGCACCA
                                            +++++++ ++
1    CCGACCCAAATGTAATGGAACAATATTATTTGACACTTGATCAGCAGCAAAATAATCACCAAAATATGGCCTGGT

       [+2]
       3.9e-05
       TCTGGCACAG
       ++++++ +
151  CGTCTGGCGCCCTTCCCATTCCGAACCATGTTATATTGAACCATCTGGCGACAAGCAGTATTAAGCATAATACAT

                                      [-2]
                                      7.4e-07
                                      CTGTGCCAGA
                                      ++++++++++
526  CAATCCCCACTCCTTCTCAATGTGTGCAGACTTCTGTGCCAGACACTGAATATATATCAGTAATTGGTCAAAATC

               [+1]                         [+1]
               8.7e-07                      2.2e-05
               TTCACATGCCGC                 TTCACATGCCGC
               ++++++ +++ +                 +++++++++  +
601  ACTTTGAACGTTCACACGGCACCCTCACGCCTTTGAGCTTTCACATGGACCCATCTAAAGATGAAGATCCGTATT



FAS2
S D ?

sequence of the region upstream from YPL231W
LENGTH = 800 COMBINED P-VALUE = 1.76e-04 E-VALUE = 0.0012
DIAGRAM: 184-[-2]-372-[+1]-194-[+3]-17

                                       [-2]
                                       2.9e-05
                                       CTGTGCCAGA
                                         ++++++++
151  AACAGGGTGTCGGTCATACCGATAAAGCCGTCAAGAGTGCCAGAAAAGCAAGAAAGAACAAGATTAGATGTTGGT

                                              [+1]
                                              1.9e-06
                                              TTCACATGCCGC
                                              +++++++++  +
526  GCTTAGCAAAATCCAACCATTTTTTTTTTATCTCCCGCGTTTTCACATGCTACCTCATTCGCCTCGTAACGTTAC

                           [+3]
                           8.2e-06
                           CAGCGGCACCA
                           +++++ +++++
751  ATATTAGACGTTTAAAGGGCTACAGCAACACCAATTGAAATACCATCATT


Debugging Information



CPU: nbcr2
Time 0.080000 secs.

mast meme.INO_up800.oops.4.sunsparcsolaris.html -stdout


Button Help

E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
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