Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2001/03/01 11:41:04)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE INO_up800.s (nucleotide)
	Last updated on Thu Mar  1 08:28:30 2001
	Database contains 7 sequences, 5600 residues

	Scores for positive and reverse complement strands are combined.

	MOTIFS meme.INO_up800.zoops.4.sunsparcsolaris.html (nucleotide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    16   ACTTTTCACATGCCCC
	  2    15   CAGGGCAGGTGTCAA
	  3    47   CCGTAAGGTCTTCCACGCAGAACTGCGACAACGCCCGCCGATGACAG

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1     2
	----- ----- -----
	   2   0.14
	   3   0.34  0.23
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.281 C 0.222 G 0.229 T 0.267 


SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
CHO2 sequence of the region up... 2e-21 800
D A ?
INO1 sequence of the region up... 3.4e-20 800
D A ?
OPI3 sequence of the region up... 3.7e-19 800
D A ?
FAS1 sequence of the region up... 2.4e-16 800
D A ?
ACC1 sequence of the region up... 4.7e-05 800
D A ?
CHO1 sequence of the region up... 6.8e-05 800
D A ?
FAS2 sequence of the region up... 0.00079 800


SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
CHO2 2e-21

+3
-2
+1
+3
S A ?
INO1 3.4e-20

+3
-1
-1
+2
S A ?
OPI3 3.7e-19

+3
+3
+2
-1
S A ?
FAS1 2.4e-16

-2
+1
+3
S A ?
ACC1 4.7e-05

+1
+2
S A ?
CHO1 6.8e-05

-2
+1
+1
S A ?
FAS2 0.00079

+2
+1
SCALE
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
1 25 50 75 100 125 150 175 200 225 250 275 300 325 350 375 400 425 450 475 500 525 550 575 600 625 650 675 700 725 750 775


SECTION III: ANNOTATED SEQUENCES


CHO2
S D ?

sequence of the region upstream from YGR157W
LENGTH = 800 COMBINED P-VALUE = 2.91e-22 E-VALUE = 2e-21
DIAGRAM: 30-[+3]-26-[-2]-231-[+1]-9-[+3]-379
                                   [+3]
                                   2.7e-05
                                   CCGTAAGGTCTTCCACGCAGAACTGCGACAACGCCCGCCGATGAC
                                   + ++++  +       +++ ++++++ +  ++ +++ ++ + ++
1    ACCCTCTAACGCGAATAAAGCGAATGACAGCGGCACCATTAATATGGCGAAACTGCAATTACTACCTGAAAACCA

                                 [-2]
                                 1.4e-09
     AG                          TTGACACCTGCCCTG
     ++                          +++++++++++++++
76   ACAAGATATGATCAAACAAGTTCTTACTTTGACACCTGCCCAGATCCAAAGTTTACCAAGTGACCAGCAACTTAT

                                                      [+1]                     [
                                                      8.9e-09                  3
                                                      ACTTTTCACATGCCCC         C
                                                      +++++++ ++++++++         +
301  ATATATATTTTTGCCTTGGTTTAAATTGGTCAAGACAGTCAATTGCCACACTTTTCTCATGCCGCATTCATTATT

     +3]
     .9e-18
     CGTAAGGTCTTCCACGCAGAACTGCGACAACGCCCGCCGATGACAG
     ++++++++ ++++++ ++ +++++ ++++++++ ++++++++++++
376  CGCGAAGTTTTCCACACAAAACTGTGAAAATGAACGGCGATGCCAGAAACGGCAAAACCTCAAATGTTAGATAAC



INO1
S D ?

sequence of the region upstream from YJL153C
LENGTH = 800 COMBINED P-VALUE = 4.90e-21 E-VALUE = 3.4e-20
DIAGRAM: 254-[+3]-269-[-1]-33-[-1]-78-[+2]-72

                                  [+3]
                                  9.1e-19
                                  CCGTAAGGTCTTCCACGCAGAACTGCGACAACGCCCGCCGATGACA
                                  +++++++ ++++ +++++++++ ++++++ ++++++++++  ++++
226  ACGTTGTATATGAAACGAGTAGTGAACGTTCGTACGATCTTTCACGCAGACATGCGACTGCGCCCGCCGTAGACC

     
     
     G
     +
301  GTGACCTGGAAGCTCACCCTGCAGAGGAATCTCAAGCACAGCCTCCAGCATATGATGAAGACGATGAGGCCGGTG

                                                  [-1]
                                                  9.0e-05
                                                  GGGGCATGTGAAAAGT
                                                  +  + ++++++++  +
526  TGAAATACGTGCCGGTGTTCCGGGGTTGGATGCGGAATCGAAAGTGTTGAATGTGAAATATGCGGAGGCCAAGTA

                        [-1]
                        3.7e-10
                        GGGGCATGTGAAAAGT
                        ++++++++++++++++
601  TGCGCTTCGGCGGCTAAATGCGGCATGTGAAAAGTATTGTCTATTTTATCTTCATCCTTCTTTCCCAGAATATTG

                                           [+2]
                                           2.6e-06
                                           CAGGGCAGGTGTCAA
                                           +++ +  ++ + +++
676  AACTTATTTAATTCACATGGAGCAGAGAAAGCGCACCTCTGCGTTGGCGGCAATGTTAATTTGAGACGTATATAA



OPI3
S D ?

sequence of the region upstream from YJR073C
LENGTH = 800 COMBINED P-VALUE = 5.33e-20 E-VALUE = 3.7e-19
DIAGRAM: 51-[+3]-206-[+3]-214-[+2]-4-[-1]-200
                                                        [+3]
                                                        1.1e-05
                                                        CCGTAAGGTCTTCCACGCAGAACT
                                                         + +++  +++++++ +++ + ++
1    GTGTCCACAACGTGAAACTTCCGTACCATTTCTTGCAACAATTGGTAAACAGCATGACATCTTGCAGGCAACTCT

     
     
     GCGACAACGCCCGCCGATGACAG
       +  +++  +  ++++ +++ +
76   TTGTTGCTTGCTTGCGACGCCTCCTCCTTTGTCAAAGGTACATTAATGGAGATGACCACATCCGTGTCAAACTGG

         [+3]
         4.5e-18
         CCGTAAGGTCTTCCACGCAGAACTGCGACAACGCCCGCCGATGACAG
         +++++++++++++++++ ++++++++++++++ ++  ++++++++ +
301  AACTCCGTCAGGTCTTCCACGTGGAACTGCCAAGCCTCCTTCAGATCGCTCTTGTCGACCGTCTCCAAGAGATCC

                                             [+2]               [-1]
                                             1.3e-08            1.8e-07
                                             CAGGGCAGGTGTCAA    GGGGCATGTGAAAAGT
                                             +++++ +++++++++     + +++++++ +++++
526  TATAATTCGACTTCCTTGTTGTTCATGCTTCCTTGATGACCAGGGTAGGTGTCAATGAGAGTGCATGTGGAAAGT



FAS1
S D ?

sequence of the region upstream from YKL182W
LENGTH = 800 COMBINED P-VALUE = 3.36e-17 E-VALUE = 2.4e-16
DIAGRAM: 53-[-2]-22-[+1]-141-[+3]-506
                                                          [-2]
                                                          1.8e-06
                                                          TTGACACCTGCCCTG
                                                          ++ ++  ++ +++++
1    CCGGGTTATAGCAGCGTCTGCTCCGCATCACGATACACGAGGTGCAGGCACGGTTCACTACTCCCCTGGCCTCCA

                    [+1]
                    3.9e-08
                    ACTTTTCACATGCCCC
                    +  +++++++++++++
76   ACAAACGACGGCCAAAAACTTCACATGCCGCCCAGCCAAGCATAATTACGCAACAGCGATCTTTCCGTCGCACAA

                           [+3]
                           1.2e-16
                           CCGTAAGGTCTTCCACGCAGAACTGCGACAACGCCCGCCGATGACAG
                           +++ +++++++++ +++   ++++++++++++ + + +++++ ++++
226  GTAAGTGTGCCTTTCCCAATCACCGAAAAGTGTTGAACGATTCACTGCGACAATAATCAGAGATTACAGTCGGCA



ACC1
S D ?

sequence of the region upstream from YNR016C
LENGTH = 800 COMBINED P-VALUE = 6.69e-06 E-VALUE = 4.7e-05
DIAGRAM: 78-[+1]-490-[+2]-201

        [+1]
        1.7e-08
        ACTTTTCACATGCCCC
        + ++++++++++++++
76   TAAAATCTTCACATGGCCCGGCCGCGCGCGCGTTGTGCCAACAAGTCGCAGTCGAAATTCAACCGCTCATTGCCA

                                                                [+2]
                                                                1.0e-06
                                                                CAGGGCAGGTGTCAA
                                                                +++++++ + + +++
526  ATCCTTATTTTTGGACAATAAACTAGAGAACAATTTGAACTTGAATTGGAATTCAGATTCAGAGCAAGAGACAAG



CHO1
S D ?

sequence of the region upstream from YER026C
LENGTH = 800 COMBINED P-VALUE = 9.71e-06 E-VALUE = 6.8e-05
DIAGRAM: 29-[-2]-562-[+1]-13-[+1]-149
                                  [-2]
                                  1.1e-06
                                  TTGACACCTGCCCTG
                                  +++++++ ++ ++++
1    CCGACCCAAATGTAATGGAACAATATTATTTGACACTTGATCAGCAGCAAAATAATCACCAAAATATGGCCTGGT

           [+1]                         [+1]
           6.8e-05                      6.9e-08
           ACTTTTCACATGCCCC             ACTTTTCACATGCCCC
           +   ++++++ +++ +             ++ ++++++++++ ++
601  ACTTTGAACGTTCACACGGCACCCTCACGCCTTTGAGCTTTCACATGGACCCATCTAAAGATGAAGATCCGTATT



FAS2
S D ?

sequence of the region upstream from YPL231W
LENGTH = 800 COMBINED P-VALUE = 1.14e-04 E-VALUE = 0.00079
DIAGRAM: 271-[+2]-276-[+1]-222

                                                   [+2]
                                                   1.9e-06
                                                   CAGGGCAGGTGTCAA
                                                   +  +++ + ++++++
226  TGATTGTATTCGCCATCATTGTAGTCGTTGTTGTTGTCGTTGTTGTCCCAGCCGTTGTCAAAACGCGTTAATTCC

                                          [+1]
                                          2.4e-07
                                          ACTTTTCACATGCCCC
                                           ++++++++++++  +
526  GCTTAGCAAAATCCAACCATTTTTTTTTTATCTCCCGCGTTTTCACATGCTACCTCATTCGCCTCGTAACGTTAC


Debugging Information



CPU: nbcr2
Time 0.400000 secs.

mast meme.INO_up800.zoops.4.sunsparcsolaris.html -stdout


Button Help

E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
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