Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2001/03/01 11:41:04)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE crp0.s (nucleotide)
	Last updated on Thu Mar  1 08:28:36 2001
	Database contains 18 sequences, 1890 residues

	Scores for positive and reverse complement strands are combined.

	MOTIFS meme.crp0.zoops.4.sunsparcsolaris.html (nucleotide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    19   TGTGAGCGAGGTCACACTT
	  2     8   CGGCGGGG
	  3    10   GCATCGGGCG

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1     2
	----- ----- -----
	   2   0.33
	   3   0.29  0.40
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.281 C 0.222 G 0.229 T 0.267 


SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
ce1cg 4.8e-05 105
D A ?
pbr322 0.00028 105
D A ?
male 0.0026 105
D A ?
ilv 0.0068 105
D A ?
ara 0.0087 105
D A ?
ompa 0.039 105
D A ?
lac 0.091 105
D A ?
crp 0.093 105
D A ?
uxu1 0.15 105
D A ?
malt 0.18 105
D A ?
gale 0.18 105
D A ?
bglr1 0.21 105
D A ?
deop2 0.27 105
D A ?
cya 0.28 105
D A ?
tnaa 0.35 105
D A ?
malk 0.71 105
D A ?
tdc 0.88 105
D A ?
trn9cat 1.2 105


SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
ce1cg 4.8e-05

+3
+1
S A ?
pbr322 0.00028

-1
+3
S A ?
male 0.0026

+1
+2
S A ?
ilv 0.0068

+2
+1
S A ?
ara 0.0087

+1
S A ?
ompa 0.039

+1
S A ?
lac 0.091

+1
S A ?
crp 0.093

+1
S A ?
uxu1 0.15

+1
S A ?
malt 0.18

-1
S A ?
gale 0.18

+1
S A ?
bglr1 0.21

+1
S A ?
deop2 0.27

+1
-1
S A ?
cya 0.28

-1
S A ?
tnaa 0.35

+1
S A ?
malk 0.71

-1
S A ?
tdc 0.88

+1
S A ?
trn9cat 1.2

-1
SCALE
| | | | |
1 25 50 75 100


SECTION III: ANNOTATED SEQUENCES


ce1cg
S D ?


LENGTH = 105 COMBINED P-VALUE = 2.67e-06 E-VALUE = 4.8e-05
DIAGRAM: 23-[+3]-30-[+1]-23
                            [+3]                                    [+1]
                            5.1e-07                                 1.1e-06
                            GCATCGGGCG                              TGTGAGCGAGGT
                            ++++++++++                              ++++++++  ++
1    TAATGTTTGTGCTGGTTTTTGTGGCATCGGGCGAGAATAGCGCGTGGTGTGAAAGACTGTTTTTTTGATCGTTTT

     
     
     CACACTT
     ++++ ++
76   CACAAAAATGGAAGTCCACAGTCTTGACAG



pbr322
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.54e-05 E-VALUE = 0.00028
DIAGRAM: 52-[-1]-21-[+3]-3
                                                         [-1]
                                                         4.7e-06
                                                         AAGTGTGACCTCGCTCACA
                                                           +++++++ + ++ ++++
1    CTGGCTTAACTATGCGGCATCAGAGCAGATTGTACTGAGAGTGCACCATATGCGGTGTGAAATACCGCACAGATG

                      [+3]
                      1.1e-06
                      GCATCGGGCG
                      ++++++++++
76   CGTAAGGAGAAAATACCGCATCAGGCGCTC



male
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.45e-04 E-VALUE = 0.0026
DIAGRAM: 16-[+1]-5-[+2]-57
                     [+1]                    [+2]
                     3.6e-06                 1.5e-05
                     TGTGAGCGAGGTCACACTT     CGGCGGGG
                     +++ +  +++ ++++++++     ++++++++
1    ACATTACCGCCAATTCTGTAACAGAGATCACACAAAGCGACGGTGGGGCGTAGGGGCAAGGAGGATGGAAAGAGG



ilv
S D ?


LENGTH = 105 COMBINED P-VALUE = 3.79e-04 E-VALUE = 0.0068
DIAGRAM: 4-[+2]-29-[+1]-45
         [+2]                                 [+1]
         7.0e-06                              2.4e-05
         CGGCGGGG                             TGTGAGCGAGGTCACACTT
         ++++++++                              ++++++ ++  + ++ ++
1    GCTCCGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAAACGTGATCAACCCCTCAATTTTCCCTTTGCTGAAA



ara
S D ?


LENGTH = 105 COMBINED P-VALUE = 4.84e-04 E-VALUE = 0.0087
DIAGRAM: 57-[+1]-29
                                                              [+1]
                                                              3.6e-08
                                                              TGTGAGCGAGGTCACACT
                                                              ++++  ++++++++++++
1    GACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCAGAAAAGTCCACATTGATTATTTGCACGGCGTCACACT

     
     
     T
     +
76   TTGCTATGCCATAGCATTTTTATCCATAAG



ompa
S D ?


LENGTH = 105 COMBINED P-VALUE = 2.17e-03 E-VALUE = 0.039
DIAGRAM: 50-[+1]-36
                                                       [+1]
                                                       4.2e-07
                                                       TGTGAGCGAGGTCACACTT
                                                         +++ +++++++++++++
1    GCTGACAAAAAAGATTAAACATACCTTATACAAGACTTTTTTTTCATATGCCTGACGGAGTTCACACTTGTAAGT



lac
S D ?


LENGTH = 105 COMBINED P-VALUE = 5.08e-03 E-VALUE = 0.091
DIAGRAM: 11-[+1]-75
                [+1]
                5.6e-06
                TGTGAGCGAGGTCACACTT
                ++++++  ++ ++++ +++
1    AACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTG



crp
S D ?


LENGTH = 105 COMBINED P-VALUE = 5.16e-03 E-VALUE = 0.093
DIAGRAM: 65-[+1]-21
                                                                      [+1]
                                                                      2.0e-06
                                                                      TGTGAGCGAG
                                                                      ++  + ++++
1    CACAAAGCGAAAGCTATGCTAAAACAGTCAGGATGCTACAGTAATACATTGATGTACTGCATGTATGCAAAGGAC

     
     
     GTCACACTT
     ++++++ ++
76   GTCACATTACCGTGCAGTACAGTTGATAGC



uxu1
S D ?


LENGTH = 105 COMBINED P-VALUE = 8.28e-03 E-VALUE = 0.15
DIAGRAM: 19-[+1]-67
                        [+1]
                        1.9e-05
                        TGTGAGCGAGGTCACACTT
                        +++++++ ++++ ++ +++
1    CCCATGAGAGTGAAATTGTTGTGATGTGGTTAACCCAATTAGAATTCGGGATTGACATGTCTTACCAAAAGGTAG



malt
S D ?


LENGTH = 105 COMBINED P-VALUE = 9.76e-03 E-VALUE = 0.18
DIAGRAM: 40-[-1]-46
                                             [-1]
                                             1.3e-06
                                             AAGTGTGACCTCGCTCACA
                                             ++ ++++++ + +  ++++
1    GATCAGCGTCGTTTTAGGTGAGTTGTTAATAAAGATTTGGAATTGTGACACAGTGCAAATTCAGACACATAAAAA



gale
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.01e-02 E-VALUE = 0.18
DIAGRAM: 44-[+1]-42
                                                 [+1]
                                                 1.3e-06
                                                 TGTGAGCGAGGTCACACTT
                                                 +++  ++ + +++++++++
1    GCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCATGTCACACTTTTCGCATCTTTG



bglr1
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.19e-02 E-VALUE = 0.21
DIAGRAM: 78-[+1]-8

        [+1]
        1.6e-06
        TGTGAGCGAGGTCACACTT
        +++++++  +++++ + ++
76   AACTGTGAGCATGGTCATATTTTTATCAAT



deop2
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.49e-02 E-VALUE = 0.27
DIAGRAM: 9-[+1]-31-[-1]-27
              [+1]                                              [-1]
              2.7e-06                                           8.7e-06
              TGTGAGCGAGGTCACACTT                               AAGTGTGACCTCGCTC
              +++++ + ++ ++ ++ ++                               ++ +++++ ++  +++
1    AGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATC

     
     
     ACA
      ++
76   GAAGTGTGTTGCGGAGTAGATGTTAGAATA



cya
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.57e-02 E-VALUE = 0.28
DIAGRAM: 49-[-1]-37
                                                      [-1]
                                                      2.9e-06
                                                      AAGTGTGACCTCGCTCACA
                                                      + ++++ ++ + ++++++
1    ACGGTGCTACACTTGTATGTAGCGCATCTTTCTTTACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGA



tnaa
S D ?


LENGTH = 105 COMBINED P-VALUE = 1.92e-02 E-VALUE = 0.35
DIAGRAM: 73-[+1]-13
                                                                              [+
                                                                              5.
                                                                              TG
                                                                              ++
1    TTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTG

     1]
     1e-06
     TGAGCGAGGTCACACTT
     ++++  + ++++++ ++
76   TGATTCGATTCACATTTAAACAATTTCAGA



malk
S D ?


LENGTH = 105 COMBINED P-VALUE = 3.94e-02 E-VALUE = 0.71
DIAGRAM: 60-[-1]-26
                                                                 [-1]
                                                                 4.2e-05
                                                                 AAGTGTGACCTCGCT
                                                                 ++  ++++ ++ +++
1    GGAGGAGGCGGGAGGATGAGAACACGGCTTCTGTGAACTAAACCGAGGTCATGTAAGGAATTTCGTGATGTTGCT

     
     
     CACA
       ++
76   TGCAAAAATCGTGGCGATTTTATGTGCGCA



tdc
S D ?


LENGTH = 105 COMBINED P-VALUE = 4.88e-02 E-VALUE = 0.88
DIAGRAM: 78-[+1]-8

        [+1]
        1.0e-05
        TGTGAGCGAGGTCACACTT
        ++++ + + ++++ +++++
76   TAATTTGTGAGTGGTCGCACATATCCTGTT



trn9cat
S D ?


LENGTH = 105 COMBINED P-VALUE = 6.71e-02 E-VALUE = 1.2
DIAGRAM: 83-[-1]-3

             [-1]
             2.4e-05
             AAGTGTGACCTCGCTCACA
             ++ ++ +++++ ++++
76   TTTGGCGAAAATGAGACGTTGATCGGCACG


Debugging Information



CPU: nbcr2
Time 0.080000 secs.

mast meme.crp0.zoops.4.sunsparcsolaris.html -stdout


Button Help

E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
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