Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2001/03/01 11:41:04)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE lipocalin.s (peptide)
	Last updated on Thu Mar  1 08:28:42 2001
	Database contains 5 sequences, 903 residues

	MOTIFS meme.lipocalin.oops.4.sunsparcsolaris.html (peptide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    19   PMRNFDIQKFAGTWHEIAK
	  2    20   NNVFWILDTDYKNYLIQYMC
	  3    18   FQQHIWVLPMSIVLTGHT

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1     2
	----- ----- -----
	   2   0.24
	   3   0.20  0.18
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058 
	L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064 
	W 0.013 Y 0.033 


SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
ICYA_MANSE 5e-42 189
D A ?
BBP_PIEBR 8.6e-41 173
D A ?
MUP2_MOUSE 6.8e-33 180
D A ?
RETB_BOVIN 2.2e-32 183
D A ?
LACB_BOVIN 2.9e-27 178


SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
ICYA_MANSE 5e-42

1
2
3
S A ?
BBP_PIEBR 8.6e-41

1
2
3
S A ?
MUP2_MOUSE 6.8e-33

1
3
2
S A ?
RETB_BOVIN 2.2e-32

1
3
2
S A ?
LACB_BOVIN 2.9e-27

1
2
3
SCALE
| | | | | | | |
1 25 50 75 100 125 150 175


SECTION III: ANNOTATED SEQUENCES


ICYA_MANSE
S D ?


LENGTH = 189 COMBINED P-VALUE = 9.91e-43 E-VALUE = 5e-42
DIAGRAM: 13-[1]-67-[2]-8-[3]-44
                  [1]
                  1.0e-18
                  PMRNFDIQKFAGTWHEIAK
                  +++++++++++++++++++
1    GDIFYPGYCPDVKPVNDFDLSAFAGAWHEIAKLPLENENQGKCTIAEYKYDGKKASVYNSFVSNGVKEYMEGDLE

                             [2]                         [3]
                             4.6e-20                     7.4e-16
                             NNVFWILDTDYKNYLIQYMC        FQQHIWVLPMSIVLTGHT
                             + ++++++++++++++++++        ++++++++++++++++++
76   IAPDAKYTKQGKYVMTFKFGQRVVNLVPWVLATDYKNYAINYNCDYHPDKKAHSIHAWILSKSKVLEGNTKEVVD



BBP_PIEBR
S D ?


LENGTH = 173 COMBINED P-VALUE = 1.72e-41 E-VALUE = 8.6e-41
DIAGRAM: 12-[1]-64-[2]-8-[3]-32
                 [1]
                 6.8e-18
                 PMRNFDIQKFAGTWHEIAK
                 +++++++++++++++++++
1    NVYHDGACPEVKPVDNFDWSNYHGKWWEVAKYPNSVEKYGKCGWAEYTPEGKSVKVSNYHVIHGKEYFIEGTAYP

                         [2]                         [3]
                         1.2e-19                     1.0e-15
                         NNVFWILDTDYKNYLIQYMC        FQQHIWVLPMSIVLTGHT
                         ++++++++++++++++++++        ++++++++++++++++++
76   VGDSKIGKIYHKLTYGGVTKENVFNVLSTDNKNYIIGYYCKYDEDKKGHQDFVWVLSRSKVLTGEAKTAVENYLI



MUP2_MOUSE
S D ?


LENGTH = 180 COMBINED P-VALUE = 1.36e-33 E-VALUE = 6.8e-33
DIAGRAM: 23-[1]-16-[3]-28-[2]-56
                            [1]                                [3]
                            3.2e-14                            2.5e-16
                            PMRNFDIQKFAGTWHEIAK                FQQHIWVLPMSIVLTGH
                            +++++ +++++++++++++                +++++++++++++++++
1    MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFH

                                  [2]
                                  1.1e-14
     T                            NNVFWILDTDYKNYLIQYMC
     +                            +++++++++++++++++++
76   TVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKE



RETB_BOVIN
S D ?


LENGTH = 183 COMBINED P-VALUE = 4.40e-33 E-VALUE = 2.2e-32
DIAGRAM: 10-[1]-6-[3]-47-[2]-63
               [1]                      [3]
               1.5e-16                  4.9e-11
               PMRNFDIQKFAGTWHEIAK      FQQHIWVLPMSIVLTGHT
               ++++++ ++++++++++++      ++++++++++++  ++++
1    ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVG

                              [2]
                              3.7e-17
                              NNVFWILDTDYKNYLIQYMC
                              + ++++++++++++++++++
76   TFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLDGTCADSYSFVFARDPSGFSPEVQK



LACB_BOVIN
S D ?


LENGTH = 178 COMBINED P-VALUE = 5.73e-28 E-VALUE = 2.9e-27
DIAGRAM: 21-[1]-64-[2]-27-[3]-9
                          [1]
                          6.2e-15
                          PMRNFDIQKFAGTWHEIAK
                          ++++ ++++++++++++++
1    MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQ

                                  [2]
                                  1.5e-13
                                  NNVFWILDTDYKNYLIQYMC
                                  ++++ +++++++ ++++++
76   KWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALE

      [3]
      5.7e-11
      FQQHIWVLPMSIVLTGHT
      ++++++++++++++++++
151  KFDKALKALPMHIRLSFNPTQLEEQCHI


Debugging Information



CPU: nbcr2
Time 0.200000 secs.

mast meme.lipocalin.oops.4.sunsparcsolaris.html -stdout


Button Help

E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
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