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| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| 3-AF1_binding_sit | ST | 38 | - | 1.000 | 0.860 | AAGAgtggaa |
| 3-AF1_binding_sit | ST | 253 | - | 1.000 | 0.860 | AAGAgctaaa |
| 3-AF1_binding_sit | ST | 485 | - | 1.000 | 0.960 | AAGAgacatt |
| 3-AF1_binding_sit | ST | 1023 | + | 1.000 | 0.960 | AAGAgatgct |
| 3-AF1_binding_sit | ST | 1110 | - | 1.000 | 0.920 | AAGAgaagca | Function: |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| A-box | Oryza sativa | 441 | - | 1.000 | 0.851 | TATCcatttct |
| A-box | Oryza sativa | 552 | - | 0.857 | 0.915 | TACCcatccgc |
| A-box | Oryza sativa | 920 | - | 1.000 | 1.000 | TAACcaaccac |
| A-box | Oryza sativa | 994 | - | 1.000 | 0.851 | TAACctaccat | Function: sequence conserved in alpha-amylase promoters |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| AACA-motif | Oryza sativa | 168 | - | 1.000 | 0.870 | gAACAaacgaca | Function: involved in endosperm-specific negative expression |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| AAGAA-motif | Avena sativa | 16 | + | 1.000 | 0.870 | ccaAAGAa |
| AAGAA-motif | Avena sativa | 277 | + | 1.000 | 0.903 | ataAAGAa |
| AAGAA-motif | Avena sativa | 333 | - | 1.000 | 0.870 | gagAAGAa |
| AAGAA-motif | Avena sativa | 437 | + | 1.000 | 0.870 | tgcAAGAa |
| AAGAA-motif | Avena sativa | 477 | - | 1.000 | 0.968 | ggtAAGAa |
| AAGAA-motif | Avena sativa | 774 | - | 1.000 | 0.870 | tggAAGAa |
| AAGAA-motif | Avena sativa | 964 | + | 1.000 | 0.903 | gtgAAGAa |
| AAGAA-motif | Avena sativa | 1097 | - | 1.000 | 0.870 | tttAAGAa |
| AAGAA-motif | Avena sativa | 1467 | + | 1.000 | 0.870 | aaaAAGAa | Function: |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| ABRE | Oryza sativa | 855 | + | 1.000 | 0.863 | tatACGTgct |
| ABRE | Arabidopsis thaliana | 857 | + | 1.000 | 1.000 | tACGTg |
| ABRE | Hordeum vulgare | 908 | + | 1.000 | 0.878 | tgtACGTgaa |
| ABRE | Arabidopsis thaliana | 910 | + | 1.000 | 1.000 | tACGTg |
| ABRE | Hordeum vulgare | 1711 | + | 0.826 | 0.856 | accGCGTgca | Function: cis-acting element involved in the abscisic acid responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| ACE | Petroselinum crispum | 855 | + | 1.000 | 0.886 | tatACGTgct |
| ACE | Petroselinum crispum | 908 | - | 1.000 | 0.886 | ttcACGTaca | Function: cis-acting element involved in light responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| AE-box | Arabidopsis thaliana | 311 | - | 1.000 | 0.886 | AGAAaccc |
| AE-box | Arabidopsis thaliana | 377 | + | 1.000 | 0.852 | AGAAtctt |
| AE-box | Arabidopsis thaliana | 671 | - | 1.000 | 0.928 | AGAAactg |
| AE-box | Arabidopsis thaliana | 968 | + | 1.000 | 0.910 | AGAAacca |
| AE-box | Arabidopsis thaliana | 1934 | + | 1.000 | 0.852 | AGAAtctt | Function: part of a module for light response |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| ATC-motif | Arabidopsis thaliana | 554 | - | 1.000 | 0.951 | acccATCC |
| ATC-motif | Arabidopsis thaliana | 896 | - | 1.000 | 0.854 | cacgATCC |
| ATC-motif | Arabidopsis thaliana | 988 | - | 1.000 | 0.951 | atcaATCC |
| ATC-motif | Arabidopsis thaliana | 1168 | - | 1.000 | 0.951 | tccaATCC |
| ATC-motif | Arabidopsis thaliana | 1978 | + | 1.000 | 0.854 | ctcgATCC | Function: part of a conserved DNA module involved in light responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| ATCC-motif | Pisum sativum | 506 | - | 1.000 | 0.875 | CAATtctc |
| ATCC-motif | Pisum sativum | 1292 | + | 1.000 | 0.875 | CAATcatc | Function: part of a conserved DNA module involved in light responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| Box-W1 | Petroselinum crispum | 100 | + | 1.000 | 1.000 | TTGAcc | Function: fungal elicitor responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| Box_I | PS | 795 | - | 1.000 | 0.857 | TTTCaag |
| Box_I | PS | 1032 | - | 1.000 | 1.000 | TTTCaaa |
| Box_I | PS | 1252 | + | 1.000 | 0.857 | TTTCaag |
| Box_I | PS | 1769 | - | 1.000 | 0.857 | TTTCgaa |
| Box_I | PS | 1909 | + | 1.000 | 0.857 | TTTCtaa | Function: |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| Box_II | ST | 75 | - | 1.000 | 1.000 | TGGTaataa |
| Box_II | ST | 477 | - | 1.000 | 0.889 | TGGTaagaa |
| Box_II | AT | 855 | - | 0.857 | 0.954 | GCACgtata |
| Box_II | AT | 908 | - | 0.857 | 0.907 | TCACgtaca |
| Box_II | AT | 1388 | + | 0.857 | 0.954 | TCACatata |
| Box_II | AT | 1911 | - | 1.000 | 0.954 | CCACttaga | Function: |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| C-repeat_DRE | AT | 617 | - | 1.000 | 0.854 | gctCCGAc |
| C-repeat_DRE | AT | 1786 | + | 1.000 | 0.854 | gctCCGAc | Function: |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| CAAT-box | Pisum sativum | 1 | - | 1.000 | 1.000 | CAAAt |
| CAAT-box | Arabidopsis thaliana | 15 | + | 1.000 | 0.857 | aCCAAa |
| CAAT-box | Arabidopsis thaliana | 80 | + | 1.000 | 0.886 | aCCAAc |
| CAAT-box | Nicotiana tabacum | 87 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Arabidopsis thaliana | 109 | - | 1.000 | 0.857 | aCCAAa |
| CAAT-box | Arabidopsis thaliana | 116 | - | 1.000 | 0.886 | gCCAAc |
| CAAT-box | Arabidopsis thaliana | 126 | + | 0.826 | 0.886 | tGCAAt |
| CAAT-box | Nicotiana tabacum | 128 | + | 1.000 | 1.000 | CAAT |
| CAAT-box | Brassica rapa | 298 | + | 1.000 | 1.000 | CAAAt |
| CAAT-box | Brassica rapa | 386 | - | 1.000 | 1.000 | CAAAt |
| CAAT-box | Arabidopsis thaliana | 387 | - | 1.000 | 0.857 | aCCAAa |
| CAAT-box | Pisum sativum | 426 | - | 1.000 | 1.000 | CAAAt |
| CAAT-box | Arabidopsis thaliana | 482 | + | 1.000 | 1.000 | aCCAAt |
| CAAT-box | Zea mays | 483 | + | 1.000 | 1.000 | CCAAt |
| CAAT-box | Nicotiana tabacum | 484 | + | 1.000 | 1.000 | CAAT |
| CAAT-box | Glycine max | 509 | - | 1.000 | 1.000 | CAATt |
| CAAT-box | Hordeum vulgare | 510 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Pisum sativum | 601 | + | 1.000 | 1.000 | CAAAt |
| CAAT-box | Arabidopsis thaliana | 624 | - | 1.000 | 0.857 | tCCAAg |
| CAAT-box | Arabidopsis thaliana | 717 | - | 1.000 | 0.857 | tCCAAa |
| CAAT-box | Arabidopsis thaliana | 730 | - | 1.000 | 0.886 | aCCAAc |
| CAAT-box | Arabidopsis thaliana | 804 | - | 1.000 | 0.857 | aCCAAa |
| CAAT-box | Arabidopsis thaliana | 829 | - | 1.000 | 0.857 | aCCAAa |
| CAAT-box | Arabidopsis thaliana | 923 | - | 1.000 | 0.886 | aCCAAc |
| CAAT-box | Petunia hybrida | 957 | - | 1.000 | 0.857 | TGCCatc |
| CAAT-box | Nicotiana tabacum | 990 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Brassica rapa | 1041 | - | 1.000 | 1.000 | CAAAt |
| CAAT-box | Pisum sativum | 1049 | - | 1.000 | 1.000 | CAAAt |
| CAAT-box | Arabidopsis thaliana | 1050 | - | 1.000 | 0.857 | aCCAAa |
| CAAT-box | Petunia hybrida | 1132 | - | 1.000 | 0.857 | TGCCaag |
| CAAT-box | Brassica rapa | 1141 | + | 1.000 | 1.000 | CAAAt |
| CAAT-box | Arabidopsis thaliana | 1165 | - | 1.000 | 0.857 | tCCAAg |
| CAAT-box | Solanum tuberosum | 1170 | - | 1.000 | 1.000 | CCAAt |
| CAAT-box | Arabidopsis thaliana | 1189 | - | 1.000 | 0.886 | tCCAAc |
| CAAT-box | Brassica rapa | 1218 | + | 1.000 | 1.000 | CAAAt |
| CAAT-box | Arabidopsis thaliana | 1269 | + | 1.000 | 0.857 | gCCAAa |
| CAAT-box | Arabidopsis thaliana | 1290 | + | 0.826 | 0.886 | cGCAAt |
| CAAT-box | Nicotiana tabacum | 1292 | + | 1.000 | 1.000 | CAAT |
| CAAT-box | Pisum sativum | 1312 | + | 1.000 | 1.000 | CAAAt |
| CAAT-box | Glycine max | 1321 | + | 1.000 | 1.000 | CAATt |
| CAAT-box | Brassica rapa | 1323 | - | 1.000 | 1.000 | CAAAt |
| CAAT-box | Arabidopsis thaliana | 1406 | + | 1.000 | 0.857 | tCCAAg |
| CAAT-box | Hordeum vulgare | 1430 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Solanum tuberosum | 1438 | - | 1.000 | 1.000 | CCAAt |
| CAAT-box | Arabidopsis thaliana | 1445 | + | 1.000 | 0.857 | gCCAAg |
| CAAT-box | Hordeum vulgare | 1480 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Pisum sativum | 1547 | + | 1.000 | 1.000 | CAAAt |
| CAAT-box | Nicotiana tabacum | 1582 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Hordeum vulgare | 1647 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Arabidopsis thaliana | 1680 | + | 1.000 | 0.857 | gCCAAa |
| CAAT-box | Hordeum vulgare | 1699 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Nicotiana tabacum | 1751 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Arabidopsis thaliana | 1755 | - | 1.000 | 0.857 | tCCAAg |
| CAAT-box | Nicotiana tabacum | 1795 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Hordeum vulgare | 1808 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Brassica rapa | 1857 | + | 1.000 | 1.000 | CAAAt |
| CAAT-box | Arabidopsis thaliana | 1890 | + | 0.826 | 0.886 | tGCAAt |
| CAAT-box | Nicotiana tabacum | 1892 | + | 1.000 | 1.000 | CAAT |
| CAAT-box | Arabidopsis thaliana | 1922 | - | 1.000 | 0.886 | tCCAAc |
| CAAT-box | Glycine max | 1953 | - | 1.000 | 1.000 | CAATt |
| CAAT-box | Nicotiana tabacum | 1954 | - | 1.000 | 1.000 | CAAT |
| CAAT-box | Arabidopsis thaliana | 1973 | + | 1.000 | 0.886 | gCCAAc | Function: common cis-acting element in promoter and enhancer regions |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| CATT-motif | Zea mays | 746 | - | 1.000 | 1.000 | GCATtc | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| CGTCA-motif | Hordeum vulgare | 227 | - | 1.000 | 1.000 | CGTCa |
| CGTCA-motif | Hordeum vulgare | 755 | + | 1.000 | 1.000 | CGTCa | Function: cis-acting regulatory element involved in the MeJA-responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| E2Fa | Nicotiana tabacum | 1898 | - | 1.000 | 0.875 | TTTCcagc | Function: |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| EIRE | Nicotiana tabacum | 292 | + | 1.000 | 0.857 | TTCGatc |
| EIRE | Nicotiana tabacum | 398 | - | 1.000 | 0.857 | TTCGaca |
| EIRE | Nicotiana tabacum | 949 | + | 1.000 | 0.857 | TTCGatc |
| EIRE | Nicotiana tabacum | 1947 | - | 1.000 | 0.857 | TTCGccc | Function: elicitor-responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| ELI-box3 | Brassica oleracea | 386 | - | 1.000 | 0.889 | AAACcaaat | Function: elicitor-responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| ERE | Dianthus caryophyllus | 795 | - | 1.000 | 0.875 | ATTTcaag |
| ERE | Dianthus caryophyllus | 1251 | + | 1.000 | 0.875 | ATTTcaag | Function: ethylene-responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| G-box | Antirrhinum majus | 857 | - | 1.000 | 1.000 | CACGta |
| G-box | Pisum sativum | 910 | - | 1.000 | 0.868 | CACGta |
| G-box | Pisum sativum | 1199 | + | 0.800 | 0.920 | CACTtg |
| G-box | Triticum aestivum | 1910 | - | 1.000 | 0.885 | tCCACttagaa | Function: cis-acting regulatory element involved in light responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| G-box | Zea mays | 306 | - | 1.000 | 0.952 | CACGac |
| G-box | Hordeum vulgare | 455 | + | 0.857 | 0.938 | ctGGTG |
| G-box | Zea mays | 541 | + | 1.000 | 0.922 | CACGat |
| G-box | Zea mays | 850 | + | 0.826 | 0.856 | CATGtt |
| G-box | Brassica oleracea | 855 | + | 1.000 | 0.951 | tatACGTg |
| G-box | Brassica napus | 856 | - | 1.000 | 0.881 | gcACGTat |
| G-box | Daucus carota | 857 | + | 1.000 | 1.000 | tACGTg |
| G-box | Zea mays | 898 | - | 1.000 | 0.922 | CACGat |
| G-box | Zea mays | 904 | - | 0.826 | 0.856 | CATGtt |
| G-box | Brassica napus | 909 | - | 1.000 | 0.865 | tcACGTac |
| G-box | Daucus carota | 910 | + | 1.000 | 1.000 | tACGTg |
| G-box | Hordeum vulgare | 943 | + | 0.857 | 0.875 | cgAGTG |
| G-box | Hordeum vulgare | 973 | + | 0.857 | 0.875 | ccAGTG |
| G-box | Zea mays | 1104 | - | 1.000 | 0.874 | CACGct |
| G-box | Hordeum vulgare | 1106 | + | 1.000 | 0.938 | cgTGTG |
| G-box | Hordeum vulgare | 1151 | + | 1.000 | 0.938 | ccTGTG |
| G-box | Hordeum vulgare | 1199 | - | 0.857 | 0.938 | caAGTG |
| G-box | Zea mays | 1244 | - | 1.000 | 0.952 | CACGac |
| G-box | Zea mays | 1262 | - | 1.000 | 0.859 | CACGga |
| G-box | Zea mays | 1713 | - | 1.000 | 0.889 | CACGcg |
| G-box | Zea mays | 1761 | + | 1.000 | 0.922 | CACGat |
| G-box | Hordeum vulgare | 1958 | + | 0.857 | 0.938 | ctGGTG | Function: cis-acting regulatory element involved in light responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| GAG-motif | Spinacia oleracea | 162 | - | 1.000 | 0.857 | AGAGaag |
| GAG-motif | Hordeum vulgare | 335 | - | 1.000 | 0.857 | GGAGaag |
| GAG-motif | Arabidopsis thaliana | 375 | + | 1.000 | 0.857 | AGAGaat |
| GAG-motif | Arabidopsis thaliana | 505 | + | 1.000 | 0.857 | AGAGaat |
| GAG-motif | Arabidopsis thaliana | 790 | - | 1.000 | 0.857 | AGAGtgt |
| GAG-motif | Spinacia oleracea | 1024 | + | 1.000 | 1.000 | AGAGatg |
| GAG-motif | Spinacia oleracea | 1112 | - | 1.000 | 0.857 | AGAGaag |
| GAG-motif | Hordeum vulgare | 1296 | - | 1.000 | 1.000 | GGAGatg | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| GATA-motif | Pisum sativum | 448 | + | 1.000 | 0.857 | GATAagg | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| GC-motif | Zea mays | 307 | - | 0.909 | 0.877 | ccCACGa |
| GC-motif | Zea mays | 1574 | + | 1.000 | 0.896 | acCCCGa | Function: enhancer-like element involved in anoxic specific inducibility |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| GC-repeat | Oryza sativa | 1283 | - | 0.857 | 0.889 | gCTCCagg |
| GC-repeat | Oryza sativa | 1945 | - | 1.000 | 0.945 | tCGCCcag | Function: ? |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| GCN4-motif | Oryza sativa | 1266 | + | 0.867 | 0.934 | tgaGCCA |
| GCN4-motif | Oryza sativa | 1316 | + | 1.000 | 1.000 | tgaGTCA | Function: cis-regulatory element involved in endosperm expression |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| GT1-motif | Avena sativa | 926 | + | 1.000 | 0.857 | GGTTagt |
| GT1-motif | Avena sativa | 1707 | - | 1.000 | 0.857 | GGTTaaa |
| GT1-motif | Arabidopsis thaliana | 1708 | - | 1.000 | 1.000 | GGTTaa | Function: light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| GTGGC-motif | Arabidopsis thaliana | 1269 | - | 1.000 | 0.909 | CATCgtttggc | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| Gap-box | Arabidopsis thaliana | 381 | - | 1.000 | 0.889 | AAATgaaga |
| Gap-box | Arabidopsis thaliana | 443 | + | 1.000 | 0.889 | AAATggata |
| Gap-box | Arabidopsis thaliana | 1658 | + | 1.000 | 0.889 | AAATggtga | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| HSE | Brassica oleracea | 24 | + | 1.000 | 0.896 | gGAAActtt |
| HSE | Brassica oleracea | 151 | - | 0.944 | 0.901 | aAAAActca |
| HSE | Brassica oleracea | 208 | - | 1.000 | 0.903 | aGAAAttct |
| HSE | Brassica oleracea | 429 | - | 0.944 | 0.901 | aAAAActca |
| HSE | Brassica oleracea | 670 | - | 1.000 | 0.923 | aGAAActgc |
| HSE | Brassica oleracea | 1034 | + | 1.000 | 0.875 | tGAAActat |
| HSE | Brassica oleracea | 1655 | + | 1.000 | 0.885 | aGAAAatgg | Function: cis-acting element involved in heat stress responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| I-box | Pisum sativum | 384 | - | 0.857 | 0.883 | cAAATga |
| I-box | Zea mays | 447 | + | 1.000 | 0.943 | gGATAaggct |
| I-box | Arabidopsis thaliana | 448 | + | 1.000 | 0.980 | gATAAggct |
| I-box | Triticum aestivum | 518 | - | 1.000 | 0.863 | AGATaaag |
| I-box | Pisum sativum | 520 | - | 1.000 | 1.000 | gAGATaa |
| I-box | Pisum sativum | 635 | + | 1.000 | 0.941 | cAGATaa |
| I-box | Triticum aestivum | 636 | + | 1.000 | 0.961 | AGATaagc |
| I-box | Helianthus annuus | 637 | + | 1.000 | 0.925 | GATAagctg |
| I-box | Solanum tuberosum | 687 | + | 0.857 | 0.903 | gATGAtat |
| I-box | Flaveria trinervia | 689 | - | 1.000 | 0.941 | gATATca |
| I-box | Flaveria trinervia | 690 | + | 1.000 | 0.941 | gATATct |
| I-box | Arabidopsis thaliana | 721 | + | 1.000 | 0.916 | gATAAagct |
| I-box | Pisum sativum | 849 | - | 0.857 | 0.883 | aACATga |
| I-box | Pisum sativum | 868 | - | 0.857 | 0.941 | tACATaa |
| I-box | Pisum sativum | 1128 | - | 1.000 | 0.883 | aAGATta |
| I-box | Arabidopsis thaliana | 1159 | + | 0.857 | 0.927 | gCTAAgctt |
| I-box | Pisum sativum | 1213 | + | 0.857 | 0.883 | tACATca |
| I-box | Solanum tuberosum | 1293 | + | 0.857 | 0.903 | aATCAtct |
| I-box | Pisum sativum | 1295 | - | 1.000 | 1.000 | gAGATga |
| I-box | Pisum sativum | 1312 | + | 0.857 | 0.883 | cAAATga |
| I-box | Flaveria trinervia | 1390 | - | 1.000 | 0.883 | tATATgt |
| I-box | Flaveria trinervia | 1391 | + | 1.000 | 0.941 | cATATac |
| I-box | Flaveria trinervia | 1400 | - | 1.000 | 0.941 | aATATgc |
| I-box | Flaveria trinervia | 1401 | + | 1.000 | 0.941 | cATATtc |
| I-box | Pisum sativum | 1538 | + | 1.000 | 1.000 | tAGATga |
| I-box | Solanum tuberosum | 1539 | - | 0.857 | 0.903 | cATCAtct |
| I-box | Pisum sativum | 1547 | + | 0.857 | 0.883 | cAAATga |
| I-box | Flaveria trinervia | 1578 | - | 1.000 | 0.941 | aATATcg |
| I-box | Flaveria trinervia | 1579 | + | 1.000 | 0.941 | gATATtg |
| I-box | Flaveria trinervia | 1601 | - | 1.000 | 0.883 | gATATaa |
| I-box | Pisum sativum | 1602 | + | 1.000 | 0.941 | tATATca |
| I-box | Pisum sativum | 1775 | + | 1.000 | 0.941 | aATATaa |
| I-box | Solanum tuberosum | 1776 | - | 1.000 | 0.903 | cATTAtat |
| I-box | Solanum tuberosum | 1777 | + | 1.000 | 1.000 | tATAAtgt |
| I-box | Arabidopsis thaliana | 1799 | - | 1.000 | 0.899 | cATAAtgat |
| I-box | Flaveria trinervia | 1869 | - | 1.000 | 0.941 | cATATtc |
| I-box | Flaveria trinervia | 1870 | + | 1.000 | 0.941 | aATATgc |
| I-box | Arabidopsis thaliana | 1930 | + | 1.000 | 0.899 | cATAAgaat | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| LAMP element | Pisum sativum | 275 | - | 1.000 | 0.875 | CTTTataa |
| LAMP element | Spinacia oleracea | 446 | - | 1.000 | 1.000 | ccttATCCa |
| LAMP element | Pisum sativum | 518 | + | 1.000 | 0.875 | CTTTatct |
| LAMP element | Spinacia oleracea | 719 | - | 1.000 | 0.854 | ctttATCCa |
| LAMP element | Pisum sativum | 720 | - | 1.000 | 0.875 | CTTTatcc |
| LAMP element | Spinacia oleracea | 1046 | - | 1.000 | 1.000 | ccaaATCCa | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| LS7 | Triticum aestivum | 1466 | - | 1.000 | 0.857 | CAGActtcttttta | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| MBS | Arabidopsis thaliana | 1091 | - | 1.000 | 1.000 | CAACtg | Function: MYB binding site involved in drought-inducibility |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| MRE | Petroselinum crispum | 109 | - | 1.000 | 0.857 | AACCaaa |
| MRE | Petroselinum crispum | 387 | - | 1.000 | 0.857 | AACCaaa |
| MRE | Petroselinum crispum | 997 | - | 1.000 | 0.857 | AACCtac |
| MRE | Petroselinum crispum | 1883 | + | 1.000 | 0.857 | AACCtga | Function: MYB binding site involved in light responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| O2-site | Zea mays | 649 | + | 1.000 | 0.908 | GATGaaatgt | Function: cis-acting regulatory element involved in zein metabolism regulation |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| P-box | Oryza sativa | 181 | - | 1.000 | 0.857 | CCTTtcg |
| P-box | Oryza sativa | 571 | + | 1.000 | 0.857 | CCTTctg |
| P-box | Oryza sativa | 1876 | + | 1.000 | 1.000 | CCTTttg | Function: gibberellin-responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| RY-element | Oryza sativa | 1147 | + | 1.000 | 0.875 | CATGcctg |
| RY-element | Oryza sativa | 1408 | - | 1.000 | 0.875 | CATGcttg |
| RY-element | Oryza sativa | 1723 | + | 1.000 | 0.875 | CATGcagg | Function: |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| Skn-1-like motif | Oryza sativa | 226 | - | 1.000 | 1.000 | GTCAt |
| Skn-1-like motif | Oryza sativa | 1610 | + | 1.000 | 1.000 | GTCAt | Function: cis-acting regulatory element required for endosperm expression |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TATA-box | Oryza sativa | 202 | - | 0.909 | 0.956 | TACAaaa |
| TATA-box | Brassica napus | 274 | + | 1.000 | 0.892 | gtTATA |
| TATA-box | Brassica oleracea | 275 | + | 1.000 | 0.927 | tTATAaa |
| TATA-box | Daucus carota | 276 | + | 1.000 | 0.863 | TATAaaga |
| TATA-box | Pisum sativum | 781 | - | 1.000 | 0.880 | TATAcat |
| TATA-box | Glycine max | 782 | - | 1.000 | 0.891 | TATAca |
| TATA-box | Brassica napus | 784 | - | 1.000 | 0.857 | cgTATA |
| TATA-box | Oryza sativa | 852 | - | 1.000 | 0.869 | TATAaca |
| TATA-box | Brassica oleracea | 853 | - | 1.000 | 0.908 | gTATAac |
| TATA-box | Catharanthus roseus | 855 | - | 1.000 | 1.000 | TATA |
| TATA-box | Oryza sativa | 868 | - | 0.909 | 0.912 | TACAtaa |
| TATA-box | Brassica juncea | 882 | - | 1.000 | 0.857 | TATAgat |
| TATA-box | Glycine max | 883 | - | 1.000 | 0.891 | TATAga |
| TATA-box | Glycine max | 885 | + | 1.000 | 0.891 | TATAga |
| TATA-box | Brassica napus | 1001 | + | 1.000 | 0.892 | gtTATA |
| TATA-box | Catharanthus roseus | 1003 | - | 1.000 | 1.000 | TATA |
| TATA-box | Zea mays | 1097 | - | 0.909 | 0.920 | TTTAagaa |
| TATA-box | Oryza sativa | 1208 | - | 0.818 | 0.885 | TAAAaat |
| TATA-box | Zea mays | 1209 | - | 0.818 | 0.920 | TGTAaaaa |
| TATA-box | Glycine max | 1391 | - | 1.000 | 0.891 | TATAtg |
| TATA-box | Brassica napus | 1393 | - | 1.000 | 0.876 | agTATA |
| TATA-box | Brassica napus | 1462 | + | 1.000 | 0.857 | gcTATA |
| TATA-box | Brassica oleracea | 1463 | + | 1.000 | 0.927 | cTATAaa |
| TATA-box | Daucus carota | 1464 | + | 1.000 | 0.863 | TATAaaaa |
| TATA-box | Oryza sativa | 1466 | + | 0.818 | 0.872 | TAAAaag |
| TATA-box | Zea mays | 1598 | - | 1.000 | 0.920 | TATAaaag |
| TATA-box | Petunia hybrida | 1599 | - | 1.000 | 0.857 | TATAaaa |
| TATA-box | Helianthus annuus | 1600 | - | 1.000 | 1.000 | TATAaa |
| TATA-box | Glycine max | 1602 | + | 1.000 | 0.891 | TATAtc |
| TATA-box | Glycine max | 1775 | + | 0.867 | 0.927 | AATAta |
| TATA-box | Brassica oleracea | 1776 | + | 1.000 | 1.000 | aTATAat |
| TATA-box | Petroselinum crispum | 1777 | + | 1.000 | 0.878 | TATAat |
| TATA-box | Zea mays | 1861 | + | 0.909 | 0.879 | TTTAtgaa |
| TATA-box | Oryza sativa | 1908 | - | 0.818 | 0.872 | TAGAaag | Function: core promoter element around -30 of transcription start |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TATC-box | Oryza sativa | 521 | + | 1.000 | 0.857 | TATCtca |
| TATC-box | Oryza sativa | 718 | - | 1.000 | 0.857 | TATCcaa | Function: cis-acting element involved in gibberellin-responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TATCCAT_C-motif | OS | 445 | - | 1.000 | 1.000 | TATCcat |
| TATCCAT_C-motif | OS | 718 | - | 1.000 | 0.857 | TATCcaa | Function: |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TC-rich_repeats | NT | 314 | + | 0.867 | 0.853 | tTTCTctgaa |
| TC-rich_repeats | NT | 372 | - | 0.867 | 0.896 | aTTCTctact |
| TC-rich_repeats | NT | 502 | - | 0.867 | 0.925 | aTTCTctgca |
| TC-rich_repeats | NT | 1652 | - | 1.000 | 0.987 | aTTTTctcaa | Function: |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TCA-element | Brassica oleracea | 256 | - | 1.000 | 0.856 | gAGAAgagct |
| TCA-element | Brassica oleracea | 331 | - | 1.000 | 0.885 | gAGAAgaagt | Function: cis-acting element involved in salicylic acid responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TCCC-motif | Spinacia oleracea | 214 | + | 1.000 | 0.857 | TCTCcat |
| TCCC-motif | Spinacia oleracea | 234 | + | 1.000 | 0.857 | TCTCact |
| TCCC-motif | Spinacia oleracea | 337 | + | 1.000 | 0.857 | TCTCcgt |
| TCCC-motif | Spinacia oleracea | 461 | + | 1.000 | 0.857 | TCTCcgt |
| TCCC-motif | Spinacia oleracea | 528 | - | 1.000 | 0.857 | TCTCcca |
| TCCC-motif | Spinacia oleracea | 1493 | - | 1.000 | 0.857 | TCTCcat | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TCT-motif | Arabidopsis thaliana | 478 | + | 1.000 | 1.000 | TCTTac | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TGA-1 | Brassica oleracea | 70 | - | 1.000 | 1.000 | AACGac |
| TGA-1 | Brassica oleracea | 169 | - | 1.000 | 1.000 | AACGac | Function: auxin-responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TGACG-motif | Hordeum vulgare | 227 | + | 1.000 | 1.000 | TGACg |
| TGACG-motif | Hordeum vulgare | 755 | - | 1.000 | 1.000 | TGACg | Function: cis-acting regulatory element involved in the MeJA-responsiveness |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| TGG-motif | Helianthus annuus | 1440 | + | 1.000 | 0.889 | TGGTggcca | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| WUN-motif | Brassica oleracea | 75 | + | 0.857 | 0.948 | tTATTacca |
| WUN-motif | Brassica oleracea | 288 | + | 1.000 | 0.948 | gAATTtcga |
| WUN-motif | Brassica oleracea | 299 | + | 1.000 | 0.948 | aAATTccgt |
| WUN-motif | Brassica oleracea | 440 | - | 1.000 | 0.895 | cCATTtctt |
| WUN-motif | Brassica oleracea | 650 | - | 1.000 | 0.948 | aCATTtcat |
| WUN-motif | Brassica oleracea | 710 | - | 1.000 | 0.895 | aAATTcctt |
| WUN-motif | Brassica oleracea | 796 | - | 0.857 | 0.895 | aGATTtcaa |
| WUN-motif | Brassica oleracea | 913 | - | 1.000 | 0.895 | aCATTtcac |
| WUN-motif | Brassica oleracea | 1249 | + | 1.000 | 0.895 | gCATTtcaa |
| WUN-motif | Brassica oleracea | 1508 | + | 0.857 | 0.948 | tTATTacga |
| WUN-motif | Brassica oleracea | 1623 | - | 1.000 | 0.948 | gCATTtcca |
| WUN-motif | Brassica oleracea | 1889 | - | 1.000 | 0.895 | tCATTgcat |
| WUN-motif | Brassica oleracea | 1900 | - | 1.000 | 0.948 | gCATTtcca |
| WUN-motif | Brassica oleracea | 1949 | - | 1.000 | 0.895 | cAATTtcgc | Function: wound-responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| Chs-CMA2a | Hordeum vulgare | 1951 | - | 1.000 | 0.875 | GCAAtttc | Function: part of a light responsive element |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| Circadian clock | Lycopersicon esculentum | 798 | - | 1.000 | 0.900 | CAAAgatttc | Function: cis-acting regulatory element involved in circadian control |
| Site Name | Organism | Position | Strand | Core simil. | Matrix simil | sequence |
|---|---|---|---|---|---|---|
| Plant AP-2-like | Oryza sativa | 859 | + | 0.857 | 0.903 | cgtgCTGG |
| Plant AP-2-like | Oryza sativa | 1829 | - | 0.857 | 0.903 | cgaaCGGG |
| Plant AP-2-like | Oryza sativa | 1831 | + | 0.857 | 0.854 | cgttCGGG | Function: ? |