DeMasker has been a project, which is best described as a "toolbox". A set of routines written in Java, consisting of a number of special solutions for special problems is not a project which is already "ready-to-run". After continuing re-arrangement and revision, these modules will be published. Basically they deal with sequence similarities on a "reversed" search algorithm.

Additionally new PERL modules have been developed. These modules focus on the automated analysis of structural aspects of genes. Functional data (expression profiling, GO-associated information, etc.) is integrated.