Arabidopsis thaliana  REGULATORY  ELEMENT  ANALYZER AtREA
CRE distribution
analysis tool
CRE Inputs  Help

Avaliable
Input Formats for
CRE distribution
analysis tool

Single CRE in  consensus format

Single CRE matrix

CRE consensus Pairs


Multiple Consensus Seuqences



List of known CREs

PLACE database
ATCISDB database (Please note signs such as "(" or "/" are not allowed in AtREA,convert AtCISDB motifs which possess this sign to IUPAC)
 CRE format :
If the choosen format is consensus
 
Enter CRE consensus sequence  :
 
OR if the choosen format is matrix
Enter CRE matrix:

Matrix score cutoff: 
OR if the choosen format is CRE Consensus pair

Enter the first CRE consensus sequence  :      

Enter the second CRE consensus sequence :       

Minimum allowed distance between the CREs :        

Maximum allowed distance between the CREs:          

OR if the choosen format is multiple CRE consensus sequences

Enter up to 4 CRE consensus sequences separated by hashes(#) :

 
 Select Class  Help
Select class category :
Fold Cutoff (only for expression classes) :
Select Features Help
 Select strand :
 Select Position Window :
Select minimum frequency :
Select a P-value cutoff  Help
P-value cutoff : 
 

ananyo.c@gmail.com
Department of Biophysics, Molecular Biology and Genetics, University of Calcutta, India