GOMF(Gene Ontology Molecular Function) Classes included in AtREA

GO class ID
Class Description
Number of genes   in the GOMF class ( in affy 22k dataset)
GO:0000036 acyl carrier activity 10
GO:0000156 two-component response regulator activity 33
GO:0000166 nucleotide binding 220
GO:0000175 3'-5'-exoribonuclease activity 9
GO:0000287 magnesium ion binding 29
GO:0003676 nucleic acid binding 330
GO:0003677 DNA binding 1115
GO:0003682 chromatin binding 26
GO:0003684 damaged DNA binding 22
GO:0003697 single-stranded DNA binding 11
GO:0003700 transcription factor activity 1432
GO:0003702 RNA polymerase II transcription factor activity 16
GO:0003713 transcription coactivator activity 18
GO:0003723 RNA binding 310
GO:0003724 RNA helicase activity 11
GO:0003725 double-stranded RNA binding 10
GO:0003735 structural constituent of ribosome 309
GO:0003743 translation initiation factor activity 76
GO:0003746 translation elongation factor activity 21
GO:0003747 translation release factor activity 11
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 53
GO:0003774 motor activity 20
GO:0003777 microtubule motor activity 65
GO:0003779 actin binding 48
GO:0003824 catalytic activity 280
GO:0003843 1,3-beta-glucan synthase activity 11
GO:0003887 DNA-directed DNA polymerase activity 14
GO:0003899 DNA-directed RNA polymerase activity 49
GO:0003918 DNA topoisomerase 9
GO:0003924 GTPase activity 32
GO:0003993 acid phosphatase activity 38
GO:0004022 alcohol dehydrogenase activity 9
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity 14
GO:0004033 aldo-keto reductase activity 9
GO:0004034 aldose 1-epimerase activity 11
GO:0004089 carbonate dehydratase activity 17
GO:0004091 carboxylesterase activity 109
GO:0004124 cysteine synthase activity 9
GO:0004126 cytidine deaminase activity 9
GO:0004129 cytochrome-c oxidase activity 12
GO:0004143 diacylglycerol kinase activity 10
GO:0004176 ATP-dependent peptidase activity 26
GO:0004185 serine carboxypeptidase activity 51
GO:0004194 pepsin A activity 55
GO:0004197 cysteine-type endopeptidase activity 13
GO:0004221 ubiquitin thiolesterase activity 19
GO:0004222 metalloendopeptidase activity 27
GO:0004252 serine-type endopeptidase activity 12
GO:0004289 subtilase activity 55
GO:0004295 trypsin activity 12
GO:0004311 farnesyltranstransferase activity 9
GO:0004332 fructose-bisphosphate aldolase activity 9
GO:0004364 glutathione transferase activity 47
GO:0004386 helicase activity 43
GO:0004407 histone deacetylase activity 12
GO:0004428 inositol or phosphatidylinositol kinase activity 15
GO:0004437 inositol or phosphatidylinositol phosphatase activity 15
GO:0004439 phosphoinositide 5-phosphatase activity 8
GO:0004497 monooxygenase activity 47
GO:0004518 nuclease activity 20
GO:0004519 endonuclease activity 14
GO:0004521 endoribonuclease activity 9
GO:0004525 ribonuclease III activity 8
GO:0004527 exonuclease activity 12
GO:0004540 ribonuclease activity 15
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 182
GO:0004556 alpha-amylase activity 8
GO:0004564 beta-fructofuranosidase activity 11
GO:0004565 beta-galactosidase activity 17
GO:0004568 chitinase activity 14
GO:0004601 peroxidase activity 72
GO:0004602 glutathione peroxidase activity 9
GO:0004605 phosphatidate cytidylyltransferase activity 8
GO:0004616 phosphogluconate dehydrogenase 8
GO:0004629 phospholipase C activity 12
GO:0004630 phospholipase D activity 12
GO:0004650 polygalacturonase activity 60
GO:0004672 protein kinase activity 157
GO:0004673 protein histidine kinase activity 15
GO:0004674 protein serine/threonine kinase activity 176
GO:0004675 transmembrane receptor protein serine/threonine kinase activity 9
GO:0004681 casein kinase I activity 9
GO:0004683 calmodulin-dependent protein kinase activity 31
GO:0004693 cyclin-dependent protein kinase activity 27
GO:0004707 MAP kinase activity 20
GO:0004708 MAP kinase kinase activity 11
GO:0004712 protein serine/threonine/tyrosine kinase activity 47
GO:0004713 protein-tyrosine kinase activity 9
GO:0004721 phosphoprotein phosphatase activity 11
GO:0004722 protein serine/threonine phosphatase activity 128
GO:0004723 calcium-dependent protein serine/threonine phosphatase activity 9
GO:0004743 pyruvate kinase activity 12
GO:0004805 trehalose-phosphatase activity 16
GO:0004806 triacylglycerol lipase activity 35
GO:0004812 aminoacyl-tRNA ligase activity 23
GO:0004842 ubiquitin-protein ligase activity 192
GO:0004843 ubiquitin-specific protease activity 22
GO:0004867 serine-type endopeptidase inhibitor activity 19
GO:0004869 cysteine protease inhibitor activity 9
GO:0004871 signal transducer activity 81
GO:0004872 receptor activity 21
GO:0004888 transmembrane receptor activity 119
GO:0005089 Rho guanyl-nucleotide exchange factor activity 14
GO:0005097 RAB GTPase activator activity 19
GO:0005102 receptor binding 14
GO:0005198 structural molecule activity 38
GO:0005199 structural constituent of cell wall 41
GO:0005200 structural constituent of cytoskeleton 27
GO:0005215 transporter activity 253
GO:0005216 ion channel activity 18
GO:0005217 intracellular ligand-gated ion channel activity 19
GO:0005242 inward rectifier potassium channel activity 11
GO:0005345 purine transmembrane transporter activity 12
GO:0005351 sugar:hydrogen ion symporter activity 82
GO:0005375 copper ion transmembrane transporter activity 9
GO:0005385 zinc ion transmembrane transporter activity 10
GO:0005388 calcium-transporting ATPase activity 14
GO:0005451 monovalent cation:proton antiporter activity 25
GO:0005484 SNAP receptor activity 28
GO:0005488 binding 751
GO:0005506 iron ion binding 46
GO:0005507 copper ion binding 100
GO:0005509 calcium ion binding 170
GO:0005515 protein binding 1133
GO:0005516 calmodulin binding 155
GO:0005524 ATP binding 620
GO:0005525 GTP binding 183
GO:0005528 FK506 binding 22
GO:0005529 sugar binding 19
GO:0005544 calcium-dependent phospholipid binding 13
GO:0008017 microtubule binding 23
GO:0008026 ATP-dependent helicase activity 79
GO:0008080 N-acetyltransferase activity 25
GO:0008081 phosphoric diester hydrolase activity 10
GO:0008094 DNA-dependent ATPase activity 13
GO:0008113 peptide-methionine- 12
GO:0008121 ubiquinol-cytochrome-c reductase activity 8
GO:0008131 amine oxidase activity 11
GO:0008135 translation factor activity, nucleic acid binding 9
GO:0008137 NADH dehydrogenase 8
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 10
GO:0008142 oxysterol binding 10
GO:0008146 sulfotransferase activity 17
GO:0008168 methyltransferase activity 28
GO:0008171 O-methyltransferase activity 20
GO:0008194 UDP-glycosyltransferase activity 94
GO:0008233 peptidase activity 58
GO:0008234 cysteine-type peptidase activity 85
GO:0008236 serine-type peptidase activity 33
GO:0008237 metallopeptidase activity 22
GO:0008266 poly 19
GO:0008270 zinc ion binding 712
GO:0008289 lipid binding 90
GO:0008308 voltage-gated anion channel activity 8
GO:0008324 cation transmembrane transporter activity 18
GO:0008327 methyl-CpG binding 13
GO:0008375 acetylglucosaminyltransferase activity 16
GO:0008415 acyltransferase activity 64
GO:0008417 fucosyltransferase activity 11
GO:0008441 3' 9
GO:0008462 endopeptidase Clp activity 9
GO:0008483 transaminase activity 19
GO:0008506 sucrose:hydrogen symporter activity 10
GO:0008514 organic anion transmembrane transporter activity 20
GO:0008536 Ran GTPase binding 18
GO:0008565 protein transporter activity 57
GO:0008601 protein phosphatase type 2A regulator activity 14
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 24
GO:0008794 arsenate reductase 13
GO:0008889 glycerophosphodiester phosphodiesterase activity 12
GO:0009055 electron carrier activity 86
GO:0009672 auxin:hydrogen symporter activity 12
GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity 11
GO:0009927 histidine phosphotransfer kinase activity 9
GO:0010181 FMN binding 11
GO:0015035 protein disulfide oxidoreductase activity 20
GO:0015079 potassium ion transmembrane transporter activity 19
GO:0015103 inorganic anion transmembrane transporter activity 10
GO:0015112 nitrate transmembrane transporter activity 9
GO:0015114 phosphate transmembrane transporter activity 8
GO:0015116 sulfate transmembrane transporter activity 14
GO:0015144 carbohydrate transmembrane transporter activity 81
GO:0015171 amino acid transmembrane transporter activity 43
GO:0015198 oligopeptide transporter activity 17
GO:0015250 water channel activity 32
GO:0015297 antiporter activity 47
GO:0015326 cationic amino acid transmembrane transporter activity 13
GO:0015385 sodium:hydrogen antiporter activity 33
GO:0015386 potassium:hydrogen antiporter activity 8
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity 44
GO:0015491 cation:cation antiporter activity 10
GO:0015562 efflux transmembrane transporter activity 8
GO:0015662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism 19
GO:0016161 beta-amylase activity 9
GO:0016168 chlorophyll binding 20
GO:0016207 4-coumarate-CoA ligase activity 13
GO:0016209 antioxidant activity 9
GO:0016216 isopenicillin-N synthase activity 9
GO:0016291 acyl-CoA thioesterase activity 12
GO:0016298 lipase activity 39
GO:0016301 kinase activity 854
GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity 15
GO:0016491 oxidoreductase activity 258
GO:0016538 cyclin-dependent protein kinase regulator activity 22
GO:0016563 transcription activator activity 71
GO:0016564 transcription repressor activity 28
GO:0016597 amino acid binding 17
GO:0016615 malate dehydrogenase activity 9
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 8
GO:0016621 cinnamoyl-CoA reductase activity 10
GO:0016688 L-ascorbate peroxidase activity 8
GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors 45
GO:0016740 transferase activity 81
GO:0016757 transferase activity, transferring glycosyl groups 309
GO:0016758 transferase activity, transferring hexosyl groups 62
GO:0016759 cellulose synthase activity 36
GO:0016762 xyloglucan:xyloglucosyl transferase activity 9
GO:0016779 nucleotidyltransferase activity 16
GO:0016787 hydrolase activity 136
GO:0016788 hydrolase activity, acting on ester bonds 24
GO:0016791 phosphoric monoester hydrolase activity 15
GO:0016798 hydrolase activity, acting on glycosyl bonds 41
GO:0016829 lyase activity 59
GO:0016844 strictosidine synthase activity 14
GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity 12
GO:0016887 ATPase activity 119
GO:0016986 transcription initiation factor activity 9
GO:0017111 nucleoside-triphosphatase activity 61
GO:0019825 oxygen binding 210
GO:0020037 heme binding 19
GO:0022857 transmembrane transporter activity 19
GO:0030145 manganese ion binding 25
GO:0030246 carbohydrate binding 44
GO:0030247 polysaccharide binding 8
GO:0030276 clathrin binding 10
GO:0030508 thiol-disulfide exchange intermediate activity 70
GO:0030528 transcription regulator activity 83
GO:0030551 cyclic nucleotide binding 28
GO:0030570 pectate lyase activity 25
GO:0030599 pectinesterase activity 69
GO:0030693 caspase activity 11
GO:0031072 heat shock protein binding 107
GO:0035091 phosphoinositide binding 8
GO:0035251 UDP-glucosyltransferase activity 8
GO:0042626 ATPase activity, coupled to transmembrane movement of substances 91
GO:0042803 protein homodimerization activity 27
GO:0043565 sequence-specific DNA binding 16
GO:0045309 protein phosphorylated amino acid binding 13
GO:0045735 nutrient reservoir activity 59
GO:0046872 metal ion binding 84
GO:0046873 metal ion transmembrane transporter activity 25
GO:0046910 pectinesterase inhibitor activity 44
GO:0046914 transition metal ion binding 16
GO:0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism 29
GO:0046961 hydrogen ion transporting ATPase activity, rotational mechanism 23
GO:0046982 protein heterodimerization activity 30
GO:0046983 protein dimerization activity 13
GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity 24
GO:0050660 FAD binding 18
GO:0050662 coenzyme binding 15
GO:0051082 unfolded protein binding 91
GO:0051287 NAD binding 11