Funcat Classes included in AtREA

FUNCAT ID
Class Description
 Number of genes in FUNCAT class(in affy 22k dataset)
01 METABOLISM 1603
01.01 amino acid metabolism 218
01.01.03 assimilation of ammonia, metabolism of the glutamate group 41
01.01.06 metabolism of the aspartate family 24
01.01.06.06 metabolism of lysine 13
01.01.06.06.01 biosynthesis of lysine 13
01.01.09 metabolism of the cysteine - aromatic group 26
01.02 nitrogen, sulfur and selenium metabolism 69
01.02.01 nitrogen, sulfur and selenium metabolism 27
01.03 nucleotide/nucleoside/nucleobase metabolism 130
01.03.01 purin nucleotide/nucleoside/nucleobase metabolism 47
01.03.04 pyrimidine nucleotide/nucleoside/nucleobase metabolism 36
01.03.07 deoxyribonucleotide metabolism 8
01.03.16 polynucleotide degradation 9
01.04 phosphate metabolism 48
01.05 C-compound and carbohydrate metabolism 692
01.05.01 C-compound and carbohydrate metabolism 286
01.05.01.01 C-compound and carbohydrate metabolism 116
01.05.01.01.01 C-compound and carbohydrate metabolism 35
01.05.01.01.03 C-compound and carbohydrate metabolism 13
01.05.01.03 C-compound and carbohydrate metabolism 55
01.05.01.03.02 C-compound and carbohydrate metabolism 25
01.06 lipid, fatty acid and isoprenoid metabolism 205
01.06.01 lipid, fatty acid and isoprenoid metabolism 96
01.06.01.07 lipid, fatty acid and isoprenoid metabolism 10
01.06.04 lipid, fatty acid and isoprenoid metabolism 44
01.06.07 lipid, fatty acid and isoprenoid metabolism 10
01.07 metabolism of vitamins, cofactors, and prosthetic groups 44
01.07.01 biosynthesis of vitamins, cofactors, and prosthetic groups 31
01.20 secondary metabolism 316
01.20.01 metabolism of primary metabolic sugar derivatives 17
01.20.01.07 metabolism of glycosides 9
01.20.13 metabolism of derivatives of homoisopentenyl pyrophosphate 32
01.20.15 metabolism of derivatives of dehydroquinic acid, shikimic acid and chorismic acid 8
01.20.17 metabolism of secondary products derived from primary amino acids 43
01.20.17.01 metabolism of nonprotein amino acids 11
01.20.17.03 metabolism of amines 9
01.20.17.07 metabolism of glycosinolates and derivatives 13
01.20.17.09 metabolism of alkaloids 10
01.20.23 metabolism of secondary products derived from L-methionine 9
01.20.35 metabolism of secondary products derived from L-phenylalanine and L-tyrosine 64
01.20.35.01 metabolism of phenylpropanoids 64
02 ENERGY 376
02.01 glycolysis and gluconeogenesis 143
02.07 pentose-phosphate pathway 22
02.10 tricarboxylic-acid pathway 54
02.11 electron transport and membrane-associated energy conservation 32
02.11.05 accessory proteins of electron transport and membrane-associated energy conservation 14
02.13 respiration 38
02.13.03 aerobic respiration 17
02.16 fermentation 18
02.19 metabolism of energy reserves 35
02.30 photosynthesis 52
02.45 energy conversion and regeneration 10
04 STORAGE PROTEIN 20
10 CELL CYCLE AND DNA PROCESSING 244
10.01 DNA processing 107
10.01.03 DNA synthesis and replication 38
10.01.05 DNA recombination and DNA repair 40
10.01.05.01 DNA repair 23
10.01.09 DNA restriction or modification 19
10.01.09.05 DNA conformation modification 19
10.03 cell cycle 148
10.03.01 mitotic cell cycle and cell cycle control 110
10.03.01.01 mitotic cell cycle 22
10.03.02 meiosis 17
10.03.03 cytokinesis 9
10.03.04 nuclear and chromosomal cycle 21
10.03.04.03 chromosome condensation 8
10.03.04.07 nuclear division 14
11 TRANSCRIPTION 777
11.02 RNA synthesis 699
11.02.01 rRNA synthesis 18
11.02.02 tRNA synthesis 20
11.02.03 mRNA synthesis 671
11.02.03.01 general transcription activities 42
11.02.03.04 transcriptional control 532
11.04 RNA processing 103
11.04.01 rRNA processing 13
11.04.03 mRNA processing 89
11.04.03.01 splicing 63
12 PROTEIN SYNTHESIS 347
12.01 ribosome biogenesis 221
12.01.01 ribosomal proteins 99
12.04 translation 160
12.04.01 translation initiation 14
12.07 translational control 24
12.10 aminoacyl-tRNA-synthetases 23
14 PROTEIN FATE 522
14.01 protein folding and stabilization 60
14.04 protein targeting, sorting and translocation 117
14.07 protein modification 123
14.07.03 modification by phosphorylation, dephosphorylation, autophosphorylation 11
14.07.05 modification by ubiquitination, deubiquitination 11
14.10 assembly of protein complexes 64
14.13 protein/peptide degradation 213
14.13.01 cytoplasmic and nuclear protein degradation 44
14.13.01.01 proteasomal degradation 23
14.13.04 lysosomal and vacuolar protein degradation 8
16 PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT 453
16.01 protein binding 83
16.02 peptide binding 8
16.03 nucleic acid binding 179
16.03.01 DNA binding 31
16.03.03 RNA binding 54
16.07 structural protein binding 27
16.13 C-compound binding 12
16.17 metal binding 33
16.17.01 calcium binding 13
16.17.09 heavy metal binding 19
16.19 nucleotide/nucleoside/nucleobase binding 134
16.19.05 GTP binding 26
18 REGULATION OF METABOLISM AND PROTEIN FUNCTION 59
18.01 regulation by 41
18.01.01 regulation by modification 12
18.01.07 regulation by binding / dissociation 36
18.02 regulation of protein activity 51
18.02.01 enzymatic activity regulation / enzyme regulator 38
18.02.01.01 enzyme activator 14
18.02.07 regulator of receptor activity 10
20 CELLULAR TRANSPORT, TRANSPORT FACILITATION AND TRANSPORT ROUTES 679
20.01 transported compounds 273
20.01.01 ion transport 132
20.01.01.01 cation transport 65
20.01.01.01.01 heavy metal ion transport 21
20.01.01.07 anion transport 47
20.01.01.07.07 phosphate transport 8
20.01.03 C-compound and carbohydrate transport 46
20.01.07 amino acid/amino acid derivatives transport 25
20.01.09 peptide transport 19
20.01.13 lipid/fatty acid transport 11
20.01.15 electron transport 24
20.01.17 nucleotide/nucleoside/nucleobase transport 12
20.03 transport facilities 385
20.03.01 channel / pore class transport 34
20.03.01.01 ion channels 27
20.03.22 transport ATPases 44
20.03.25 ABC transporters 54
20.09 transport routes 210
20.09.01 nuclear transport 18
20.09.02 chloroplast transport 14
20.09.04 mitochondrial transport 17
20.09.07 vesicular transport 80
20.09.07.05 intra Golgi transport 12
20.09.13 vacuolar/lysosomal transport 24
20.09.14 cytoskeleton-dependent transport 26
20.09.16 cellular export and secretion 26
30 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM 786
30.01 cellular signalling 736
30.01.01 cellular signalling 688
30.01.05 enzyme mediated signal transduction 75
30.01.05.05 G-protein mediated signal transduction 67
30.01.05.05.01 small GTPase mediated signal transduction 17
30.01.09 second messenger mediated signal transduction 21
30.05 transmembrane signal transduction 192
30.05.01 receptor enzyme mediated signalling 12
30.05.01.10 two-component signal transduction system 9
32 CELL RESCUE, DEFENSE AND VIRULENCE 524
32.01 stress response 215
32.05 disease, virulence and defense 219
32.05.01 resistance proteins 83
32.05.03 defense related proteins 96
32.07 detoxification 109
32.07.01 detoxification involving cytochrome P450 24
32.07.03 detoxification by modification 15
32.07.07 oxygen and radical detoxification 12
34 INTERACTION WITH THE ENVIRONMENT 80
34.01 homeostasis 16
34.01.01 homeostasis of cations 10
34.01.01.01 homeostasis of metal ions 8
34.03 membrane excitability 14
34.03.01 synaptic transmission 14
34.05 cell motility 11
34.11 cellular sensing and response to external stimulus 50
34.11.03 chemoperception and response 18
34.11.03.05 chemoperception and response 10
36 SYSTEMIC INTERACTION WITH THE ENVIRONMENT 118
36.20 plant / fungal specific systemic sensing and response 75
36.20.18 plant hormonal regulation 75
36.25 animal specific systemic sensing and response 29
36.25.01 animal sensory mechanisms 13
36.25.07 animal hormonal regulation 9
36.25.16 immune response 14
38 TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS 159
38.01 LTR retroelements 27
38.02 non-LTR retroelements 15
40 CELL FATE 201
40.01 cell growth / morphogenesis 81
40.01.03 directional cell growth 43
40.01.05 growth regulators / regulation of cell size 22
40.02 interpretation of external signals that control cell growth 107
40.10 cell death 16
40.20 cell aging 11
41 DEVELOPMENT 217
41.03 plant development 99
41.05 animal development 105
41.05.25 gametogenesis 8
42 BIOGENESIS OF CELLULAR COMPONENTS 514
42.01 cell wall 233
42.02 eukaryotic plasma membrane 12
42.03 cytoplasm 22
42.04 cytoskeleton/structural proteins 56
42.10 nucleus 74
42.10.03 organization of chromosome structure 53
42.26 plastid 99
42.26.03 chloroplast 99
43 CELL TYPE DIFFERENTIATION 13
43.01 fungal/microorganismic cell type differentiation 8
70 SUBCELLULAR LOCALIZATION 933
70.01 cell wall 65
70.02 eukaryotic plasma membrane / membrane attached 88
70.03 cytoplasm 281
70.04 cytoskeleton 71
70.04.05 microtubule cytoskeleton 9
70.07 endoplasmic reticulum 36
70.08 Golgi 27
70.09 intracellular transport vesicles 23
70.10 nucleus 325
70.10.03 chromosome 35
70.10.07 nucleolus 22
70.16 mitochondrion 78
70.25 vacuole or lysosome 18
70.26 plastid 26
70.26.03 chloroplast 26
73 CELL TYPE LOCALIZATION 15
73.03 animal cell type 15
73.03.13 neuron 9
75 TISSUE LOCALIZATION 9
75.03 animal tissue 9
77 ORGAN LOCALIZATION 18
77.03 animal organ 18
78 thyroid gland 10
98 CLASSIFICATION NOT YET CLEAR-CUT 1079