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G-language Genome Analysis Environment - Summary

All categories :: bioinformatics software development :: G-language Genome Analysis Environment

G-language GAE is a software package aiming to provide a generic development and analysis environment for the analysis of complete genomes. (Development at Bioinformatics.org is discontinued. Please proceed to the home page at http://www.g-language.org/.)


License: GNU General Public License



Public areas

This project has many places for you to explore and participate. The icons displayed below are also available at the top of the page for easy navigation.
 Project homepage
This home page points to the official page for this project, which may or may not be hosted at Bioinformatics.org.
 Public forums
There are 3 messages in 2 forums.
 Project manager
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 Support tickets
There are 0 open tickets, 0 total.
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There are 0 active surveys.
SCM repository
The SCM repository is a place for this project to store its source code. Members have access to change this master repository, while anonymous users may browse the most recent development version of this project.

Instructions
Download directory
Projects may choose to have files other than their main releases available via this directory.
Members
Project admins: Kazuharu Arakawa

Members: 8 [View all members]
Downloads
Module name: -
No files in the latest version: 1.0.2b.
Module name: Windows version discontinued
Latest release is 1.49
View: [Release Notes & Changelog]
Download: [exe]
Module name: See news for MacOS X version
No files in the latest version: 2 PR4 (1.51).
Module name: G-language GAE v.2 (UNIX)
Latest release is 1.7.1
View: [Release Notes & Changelog]
Download: [tar/gz]

[View all files]

Latest announcements
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G-language GAE 1.6.2 for MacOS X (Tiger)
Submitted by Kazuharu Arakawa; posted on Saturday, May 13, 2006
G-language GAE 1.6.2 for MacOS X (Tiger) both for Intel and PowerPC versions are now available.

Since bioinformatics.org web-server is too slow, we are distributing the package from our web-site.

[link]

Enjoy!
G-language GAE v.2 Preview Release 3 for MacOS X

This is a preview release package for MacOS X, 10.2.
Currently only the library and command line version is
available on MacOS X.

MacOS X version 10.2 with developers's kit and
gnuplot(use fink!) is required for installation. This package
may work with 10.0 or 10.1 with perl 5.6.0, but it will not
work with 10.3(Panther) that has perl 5.8.0.

GUI of G-language GAE v.2 is currently not available for
MacOS X.

Uncompress the tar ball, and follow instructions in INSTALL
text. Basically you just need to run "sh INSTALL.sh" as root
Version 2 Preview Release 3 is out!
Submitted by Kazuharu Arakawa; posted on Thursday, June 05, 2003
G-language GAE v.2 PR3 is out. This package is ready for RedHat 8 and 9, and most possibly on Yellow Dog Linux on PPC. G-language GAE v.2 is 100% upward compatible with v.1, so users using RedHat Linux 8 and 9 are recommended to use this package instead of v.1.

Many functionalities are added. Check the official web site at http://www.g-language.org/
Version 1.1.0
Submitted by Kazuharu Arakawa; posted on Tuesday, July 30, 2002
Version 1.1.0 is in CVS now, which is the first milestone release of G-language GAE version 2 branch. For details, look in the archive of g-language-users[at]bioinformatics.org.
Version 1.0.2b Released!
Submitted by Kazuharu Arakawa; posted on Tuesday, May 28, 2002
G-language Genome Analysis Environment Version 1.0.2b is released for Windows and RedHat Linux.

Significant changes have been made in the installer and the image viewer, reducing installation problems in Windows and providing greater flexibility in Linux systems.

Windows version now uses Win32 API OLE instead of gimv, so that InternetExplorer version greater than 5.5 is required.

Linux version now uses Image Magick instead of gimv.


Changes from 1.0.1 to 1.0.2:
-addition
1. incorporated CASYS (cDNA Analysis System)
and related modules.

2. incorporated OASyS (ORF Analysis System)
and related modules.

3. gimv switched to "display" (Image Magick) in Linux,
to InternetExplorer from Win32API-OLE in Windows

4. pdf files and gcf files are available

5. Inspire API

-specification changes
1. G.pm (minor change in $gb->cds())

2. SubOpt.pm (minor upgrade)

3. Rcmd.pm (minor upgrade)

4. G::Messenger.pm (minor upgrade)

-bug fix
1. G::Seq::GCskew.pm
2. G::Seq::Codon.pm
3. G::Seq::PatSearch.pm
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