Neighbor Joining
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
FastME
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
PCA
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
MDS
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
LLE Standard
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
LLE modified
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
LLE ltsa
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
LLE Hessian
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
t-sne
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Spectral embedding
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Isomap
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Sparse PCA
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
PMD
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Positive PMD
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
SFA
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
CountCluster
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Flash
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
PCA + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Sparse PCA Witten 2008, cross-validated + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
PMD oracle K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
PMD arbitrary K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Positive PMD oracle K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Positive PMD arbitrary K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
SFA oracle K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
SFA arbitrary K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
CountCluster oracle K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
CountCluster arbitrary K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Flash oracle K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Flash arbitrary K + MST
High signal
Noisy samples
Noisy features
Noisy samples & features
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree
Single edge
V-shaped branch
Y-shaped branch
Tree