|
|
Main.HomePage History
Hide minor edits - Show changes to markup
July 26, 2010, at 04:05 PM
by 82.39.32.150 -
Changed lines 10-11 from:
An ORF (Open Reading Frame) finder is a web-based program written in perl script in 2008 to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
to:
An ORF (Open Reading Frame) finder is a web-based program written in perl script in 2008 to find Orf present in a DNA sequence. Based on your input, GAUTAM ORF FINDER will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
July 21, 2010, at 03:28 PM
by 82.39.32.150 -
Changed lines 16-17 from:
Then the complimentary DNA of this sequence is:
to:
Then the program will generate complimentary DNA sequence i.e.
Changed lines 20-21 from:
Now to get ORF the Orf finder will reverse this sequence i.e.
to:
Now to get ORF the program will generate reverse complimentary DNA sequence i.e.
Changed lines 24-25 from:
Now the program will display 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence such as:
to:
Now the program will display 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Reverse complimentary DNA sequence such as:
July 21, 2010, at 03:19 PM
by 82.39.32.150 -
Changed lines 18-19 from:
to:
Changed lines 22-23 from:
to:
Changed line 32 from:
4th Reading frame: AGTTACATTG
to:
4th Reading frame: GTTACATTGA
Changed line 34 from:
5th Reading frame: GTTACATTG
to:
5th Reading frame: TTACATTGA
Changed lines 36-37 from:
6th Reading frame: TTACATTG
to:
6th Reading frame: TACATTGA
July 21, 2010, at 02:04 PM
by 82.39.32.150 -
Changed lines 46-47 from:
to:
July 21, 2010, at 11:56 AM
by Shivaditya Gautam -
Changed lines 20-21 from:
Now to get ORF the ORF finder will reverse this sequence i.e.
to:
Now to get ORF the Orf finder will reverse this sequence i.e.
July 21, 2010, at 11:55 AM
by Shivaditya Gautam - A web-based ORF finding tool.
Changed lines 20-21 from:
Now to get ORF the ORF FINDER 2008 will reverse this sequence i.e.
to:
Now to get ORF the ORF finder will reverse this sequence i.e.
July 21, 2010, at 08:09 AM
by 82.39.32.150 -
Changed lines 1-6 from:
to:
Changed lines 10-11 from:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
to:
An ORF (Open Reading Frame) finder is a web-based program written in perl script in 2008 to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
July 21, 2010, at 07:38 AM
by 82.39.32.150 -
Changed lines 10-11 from:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
to:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
July 21, 2010, at 07:36 AM
by 82.39.32.150 -
Changed lines 10-11 from:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
to:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
July 21, 2010, at 07:35 AM
by 82.39.32.150 -
Changed lines 10-11 from:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
to:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
July 21, 2010, at 07:35 AM
by 82.39.32.150 -
Changed lines 10-11 from:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
to:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
July 20, 2010, at 02:44 PM
by 82.39.32.150 -
Changed lines 1-6 from:
http://www.bioinformatics.org/groups/?group_id=1052!! ORF FINDER 2008
to:
July 20, 2010, at 02:43 PM
by 82.39.32.150 -
Changed lines 1-6 from:
to:
http://www.bioinformatics.org/groups/?group_id=1052!! ORF FINDER 2008
July 20, 2010, at 02:39 PM
by 82.39.32.150 -
Changed lines 7-9 from:
to:
July 20, 2010, at 12:05 PM
by Shivaditya Gautam - A web-based ORF finding tool.
Deleted line 0:
July 20, 2010, at 12:04 PM
by Shivaditya Gautam - A web-based ORF finging tool.
Changed lines 1-5 from:
to:
Changed lines 11-12 from:
'-An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
to:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
Changed line 51 from:
In the same way ORF FINDER 2008 will find ORF in other reading frames and at last the largest ORF will be the one which has the largest distance between START CODON & STOP CODON.-'
to:
In the same way ORF FINDER 2008 will find ORF in other reading frames and at last the largest ORF will be the one which has the largest distance between START CODON & STOP CODON.
July 20, 2010, at 12:02 PM
by Shivaditya Gautam -
Changed lines 1-6 from:
to:
July 20, 2010, at 12:02 PM
by Shivaditya Gautam -
Changed lines 1-4 from:
to:
Added line 9:
July 20, 2010, at 12:01 PM
by Shivaditya Gautam -
Changed lines 1-5 from:
to:
Changed lines 7-8 from:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
to:
'-An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
Changed line 47 from:
In the same way ORF FINDER 2008 will find ORF in other reading frames and at last the largest ORF will be the one which has the largest distance between START CODON & STOP CODON.
to:
In the same way ORF FINDER 2008 will find ORF in other reading frames and at last the largest ORF will be the one which has the largest distance between START CODON & STOP CODON.-'
July 20, 2010, at 11:59 AM
by Shivaditya Gautam -
Changed lines 1-3 from:
to:
July 20, 2010, at 11:29 AM
by Shivaditya Gautam -
Changed lines 8-9 from:
For example, if you input DNA SEQUENCE:
to:
For example, if you input DNA sequence:
July 20, 2010, at 10:20 AM
by Shivaditya Gautam -
Changed lines 22-28 from:
1st Reading frame : TCAATGTAAC
2nd Reading frame: CAATGTAAC
3rd Reading frame: AATGTAAC
4th Reading frame: AGTTACATTG
to:
1st Reading frame : TCAATGTAAC
2nd Reading frame: CAATGTAAC
3rd Reading frame: AATGTAAC
4th Reading frame: AGTTACATTG
Changed line 30 from:
5th Reading frame: GTTACATTG
to:
5th Reading frame: GTTACATTG
Changed lines 32-33 from:
6th Reading frame: TTACATTG
to:
6th Reading frame: TTACATTG
July 20, 2010, at 10:18 AM
by Shivaditya Gautam -
Changed lines 10-11 from:
to:
Changed lines 14-15 from:
to:
Changed lines 18-19 from:
to:
July 20, 2010, at 10:15 AM
by Shivaditya Gautam - Orf Finding web-based tool.
Changed lines 8-13 from:
For example, if you input DNA SEQUENCE : 5’ TCAATGTAAC 3’
Then the complimentary DNA of this sequence is: 5’ AGTTACATTG 3’
Now to get ORF the ORF FINDER 2008 will reverse this sequence i.e. 3’ GTTACATTGA 5’
to:
For example, if you input DNA SEQUENCE:
5’ TCAATGTAAC 3’
Then the complimentary DNA of this sequence is:
5’ AGTTACATTG 3’
Now to get ORF the ORF FINDER 2008 will reverse this sequence i.e.
3’ GTTACATTGA 5’
July 20, 2010, at 10:11 AM
by Shivaditya Gautam -
Added line 17:
Added line 19:
Changed lines 21-22 from:
4th Reading frame: AGTTACATTG
5th Reading frame: GTTACATTG
to:
4th Reading frame: AGTTACATTG
5th Reading frame: GTTACATTG
Changed lines 28-29 from:
to:
Added line 31:
Added line 35:
July 20, 2010, at 10:07 AM
by Shivaditya Gautam -
Changed lines 8-16 from:
For example, if you input DNA SEQUENCE
\\ 5’ TCAATGTAAC 3’
Then the complimentary DNA of this sequence is:
\\ 5’ AGTTACATTG 3’
Now to get ORF the ORF FINDER 2008 will reverse this sequence i.e.
\\ 3’ GTTACATTGA 5’
to:
For example, if you input DNA SEQUENCE : 5’ TCAATGTAAC 3’
Then the complimentary DNA of this sequence is: 5’ AGTTACATTG 3’
Now to get ORF the ORF FINDER 2008 will reverse this sequence i.e. 3’ GTTACATTGA 5’
Changed lines 16-17 from:
\\ 1st Reading frame : TCAATGTAAC
\\ 2nd Reading frame: CAATGTAAC
to:
1st Reading frame : TCAATGTAAC
2nd Reading frame: CAATGTAAC
July 20, 2010, at 10:05 AM
by Shivaditya Gautam -
Changed lines 6-7 from:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
to:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
Changed lines 9-10 from:
to:
Changed lines 12-13 from:
to:
Changed lines 15-16 from:
to:
Changed lines 19-20 from:
1st Reading frame : TCAATGTAAC
2nd Reading frame: CAATGTAAC
to:
\\ 1st Reading frame : TCAATGTAAC
\\ 2nd Reading frame: CAATGTAAC
July 20, 2010, at 10:03 AM
by Shivaditya Gautam -
Added lines 1-35:
ORF FINDER 2008
Overview:
An ORF (Open Reading Frame) finder is a web-based program to find Orf present in a DNA sequence. Based on your input, ORF FINDER 2008 will firstly generate complimentary DNA sequence. Secondly, to get Orf the program will generate reverse complimentary DNA sequence. Finally, the program generates 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence and then it displays Orf positions in all reading frames.
For example, if you input DNA SEQUENCE
5’ TCAATGTAAC 3’
Then the complimentary DNA of this sequence is:
5’ AGTTACATTG 3’
Now to get ORF the ORF FINDER 2008 will reverse this sequence i.e.
3’ GTTACATTGA 5’
Now the program will display 6 reading frames out of which there are 3 reading frames from DNA sequence and 3 reading frames from Complimentary DNA sequence such as:
1st Reading frame : TCAATGTAAC
2nd Reading frame: CAATGTAAC
3rd Reading frame: AATGTAAC
4th Reading frame: AGTTACATTG
5th Reading frame: GTTACATTG
6th Reading frame: TTACATTG
As there are following
START CODONS: ATG, GTG, TTG
STOP CODONS: TAA, TAG, TGA
So if you consider 1st Reading frame i.e.
TCAATGTAAC
Then it can be concluded that ORF will be present between ATG & TAA because ORFs are located between the start-code sequence (initiation codon) and the stop-code sequence (termination codon).
In the same way ORF FINDER 2008 will find ORF in other reading frames and at last the largest ORF will be the one which has the largest distance between START CODON & STOP CODON.
|
|