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Dr. Leonid Zaslavsky Dr. Leonid Zaslavsky [Send a message]
Member since: November 02, 2004
At NIH/NCBI, I develop software for clustering, exploratory data analysis and visualization tools for bacterial genomics and proteomics, pan-genome analysis, comparative genomics of bacterial proteomes including pathogens. I also worked on exploratory data analysis and visualization tools used in NCBI Influenza Virus Resource and NCBI Virus Variation Resources.
News items (5)
News & Commentary
PLoS Currents: Mining the NCBI Influenza Sequence Database
Submitted by Dr. Leonid Zaslavsky; posted on Tuesday, November 03, 2009
URL: Virus variation resources at the National Center for Biotechnology Information
Submitted by Dr. Leonid Zaslavsky; posted on Thursday, April 02, 2009
Software: Accelerating the neighbor-joining algorithm using the adaptive bucket data structure
Submitted by Dr. Leonid Zaslavsky; posted on Tuesday, May 27, 2008
Software: Adaptively aggregated trees with sampling-based subscale representation
Submitted by Dr. Leonid Zaslavsky; posted on Wednesday, May 21, 2008
URL: Flu DatasetExplorer: A web tool for influenza protein sequences
Submitted by Dr. Leonid Zaslavsky; posted on Wednesday, June 15, 2005 (2 comments)
Forum messages (2)
News & Commentary
Re: New URL
Submitted by Dr. Leonid Zaslavsky; posted on Tuesday, August 07, 2007
New URL
Submitted by Dr. Leonid Zaslavsky; posted on Tuesday, August 07, 2007
Curriculum vitae

Current address:

National Center for Biotechnology Information
National Institutes of Health
Bethesda, Maryland
United States

Education:

Ph.D. in computational modeling
Russian Academy of Sciences
1989 - 1993
Postdoctoral Researcher
Howard Hughes Medical Institute, NYU
1996 - 1997
Postdoctoral Researcher
The Weizmann Institute of Science
1993 - 1996

Experience:

Staff Scientist National Center for Biotechnology Information, National Institutes of Health

Skills:

Algorithms

Parallel Computing

C++

SQL

Perl, JavaScript

Activities:

ACM Senior Member Award, 2011

Sir Charles Chlore Postdoctoral Fellowship, 1993-1996

Interests:

Protein clustering

Parallel algorithms

Bacterial genomics - algorithms

Genomics of Viruses - algorithms

Visualization of bioinformatics data

References:

Zaslavsky, L. et al. Bacterial pan-genomes: data representation and analysis. ACM BCB 2013, Washington, DC, September 22-25, 2013

Zaslavsky, L. et al. A framework for pan-genome analysis and visualization. VIZBI 2012, Heidelberg, Germany, March 5-8, 2012

Zaslavsky, L. et al. Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation. BMC Bioinformatics 2008, 9:237.

Resch, W. et al. Virus variation resources at the National Center for Biotechnology Information: dengue virus. BMC Microbiol. 2009; 9: 65.

Bao, Y. et al. The Influenza Virus Resource at the National Center for Biotechnology Information, J. Virol., Vol. 82, Issue 2, 596-601, 2008

Other:

Multiresolution Representations of Biological Sequence Datasets.Phylogenetics: New data, new Phylogenetic challenges. Isaac Newton Institute for Mathematical Sciences, June 20-24, 2011

Zaslavsky, L. et al. An Adaptive Resolution Visualization of Large Influenza Virus Sequence Datasets. Lecture Notes in Computer Science, 4463, Springer, 2007. pp. 192-202.

Zaslavsky, L. et al. Tatusova, Tatiana. Mining the NCBI Influenza Sequence Database: adaptive grouping of BLAST results using precalculated neighbor indexing. PLoS Currents Influenza. 2009 Nov 2:RRN1124.

Zaslavsky, L. et al. Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure. Lecture Notes in Computer Science, 4983, Springer, 2008. pp. 122-133.

Zaslavsky, L et al. Multiresolution approaches to representation and visualization of large influenza virus sequence datasets. Proc. of IEEE Inernational Conference on Bioinformatics and Biomedicine Workshops, 2007. BIBM 2007. IEEE, 2007, pp. 109-114.

 

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