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  • Dr. Leonid Zaslavsky Dr. Leonid Zaslavsky [Send a message]
    Member since: November 02, 2004
    At NIH/NCBI, I develop software for clustering, exploratory data analysis and visualization tools for bacterial genomics and proteomics, pan-genome analysis, comparative genomics of bacterial proteomes including pathogens. I also worked on exploratory data analysis and visualization tools used in NCBI Influenza Virus Resource and NCBI Virus Variation Resources.
    News items (7)
    News & Commentary
    Software: NCBI prokaryotic genome annotation pipeline
    Submitted by Dr. Leonid Zaslavsky; posted on Friday, July 01, 2016
    PLoS Currents: Mining the NCBI Influenza Sequence Database
    Submitted by Dr. Leonid Zaslavsky; posted on Tuesday, November 03, 2009
    URL: Flu DatasetExplorer: A web tool for influenza protein sequences
    Submitted by Dr. Leonid Zaslavsky; posted on Wednesday, June 15, 2005 (2 comments)
    Forum messages (2)
    News & Commentary
    Re: New URL
    Submitted by Dr. Leonid Zaslavsky; posted on Tuesday, August 07, 2007
    New URL
    Submitted by Dr. Leonid Zaslavsky; posted on Tuesday, August 07, 2007
    Curriculum vitae

    Current address:

    National Center for Biotechnology Information
    National Institutes of Health
    Bethesda, Maryland
    United States

    Education:

    Ph.D. in computational modeling
    Russian Academy of Sciences
    1989 - 1993
    Postdoctoral Researcher
    Howard Hughes Medical Institute, NYU
    1996 - 1997
    Postdoctoral Researcher
    The Weizmann Institute of Science
    1993 - 1996

    Experience:

    Staff Scientist National Center for Biotechnology Information, National Institutes of Health

    Skills:

    Algorithms

    Parallel Computing

    C++

    SQL

    Perl, JavaScript

    Activities:

    ACM Senior Member Award, 2011

    Sir Charles Chlore Postdoctoral Fellowship, 1993-1996

    Interests:

    Protein clustering

    Parallel algorithms

    Bacterial genomics - algorithms

    Genomics of Viruses - algorithms

    Visualization of bioinformatics data

    References:

    Zaslavsky, L. et al. Bacterial pan-genomes: data representation and analysis. ACM BCB 2013, Washington, DC, September 22-25, 2013

    Zaslavsky, L. et al. A framework for pan-genome analysis and visualization. VIZBI 2012, Heidelberg, Germany, March 5-8, 2012

    Zaslavsky, L. et al. Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation. BMC Bioinformatics 2008, 9:237.

    Resch, W. et al. Virus variation resources at the National Center for Biotechnology Information: dengue virus. BMC Microbiol. 2009; 9: 65.

    Bao, Y. et al. The Influenza Virus Resource at the National Center for Biotechnology Information, J. Virol., Vol. 82, Issue 2, 596-601, 2008

    Other:

    Multiresolution Representations of Biological Sequence Datasets.Phylogenetics: New data, new Phylogenetic challenges. Isaac Newton Institute for Mathematical Sciences, June 20-24, 2011

    Zaslavsky, L. et al. An Adaptive Resolution Visualization of Large Influenza Virus Sequence Datasets. Lecture Notes in Computer Science, 4463, Springer, 2007. pp. 192-202.

    Zaslavsky, L. et al. Tatusova, Tatiana. Mining the NCBI Influenza Sequence Database: adaptive grouping of BLAST results using precalculated neighbor indexing. PLoS Currents Influenza. 2009 Nov 2:RRN1124.

    Zaslavsky, L. et al. Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure. Lecture Notes in Computer Science, 4983, Springer, 2008. pp. 122-133.

    Zaslavsky, L et al. Multiresolution approaches to representation and visualization of large influenza virus sequence datasets. Proc. of IEEE Inernational Conference on Bioinformatics and Biomedicine Workshops, 2007. BIBM 2007. IEEE, 2007, pp. 109-114.

     

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