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  • Stefan Goetz Stefan Goetz [Send a message]
    Member since: July 09, 2009
    News items (3)
    News & Commentary
    Education: Course on automated functional annotation and data-mining
    Submitted by Stefan Goetz; posted on Wednesday, July 28, 2010
    Education: Course on automated functional annotation and data-mining
    Submitted by Stefan Goetz; posted on Tuesday, July 14, 2009 (2 comments)
    Forum messages (2)
    News & Commentary
    Course on Statistical Methods for mRNA-Seq and ChIP-seq using Bioconductor
    Submitted by Stefan Goetz; posted on Wednesday, October 06, 2010
    Education: Course on automated functional annotation and data-mining
    Submitted by Stefan Goetz; posted on Wednesday, July 21, 2010
    Curriculum vitae

    Current address:

    Prince Felipe Research Centre (CIPF)
    Avda. Autopista del Saler 16, Camino de las Moreras
    Valencia, Valencia
    Spain

    Education:

    PhD in Bioinformatics
    Prince Felipe Research Centre and Polytechnic University of Valencia
    2005 - 2010
    MSc (DEA) in Declarative Programming and Software Engineering
    Polytechnic University of Valencia
    2004 - 2005
    (European) Computer Science Engineer
    University of Applied Sciences, Osnabrueck
    2000 - 2004

    Experience:

    PostDoc Researcher Prince Felipe Research Centre, Bioinformatics Department 2007 - 2010
    Visiting Researcher Department of genome-oriented Bioinformatics, Technical University of Munich (TUM) and MIPS 2008 - 2008
    PhD Student Biomedical Informatics Group at Polytechnic University of Valencia 2004 - 2007

    Skills:

    Languages: German, English, Spanish - fluent

    Bioinformatics: Transciptomics (Microarrays), PPIs, Genome Analyses, Visualisation, Functional Genomics, NGS, etc...

    Programming: Java (EE), R, Python, Perl, PHP, C, C-PlusPlus, Csharp, Tex, Bash, etc...

    Systems: MySql, Apache, Tomcat, Axis, SGE, Linux, Eclipse, etc...

    Statistics/AI/ML: Quantitative, Enrichement Analysis, Differencial Expression, Clustering, etc...

    Activities:

    Development, maintainment, user-support and teaching of/for Blast2GO, a universal tool for annotation, visualization and analysis in functional genomics research.

    Interests:

    Functional Genomics

    Functional annotation

    Function-based data mining of genomics data

    Bio-Ontologies

    Biological data integration and visualization

    References:

    Conesa,A., Goetz,S., Garcia-Gomez,JM. et al. Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005 21: 3674-3676

    Goetz,S., Garcia-Gomez,JM., Terol,J.,Williams,T., Nueda,MJ., Robles,M., Talon,M., Dopazo,J., Conesa,A. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 2008; 36(10): 3420-3435.

    Al-Shahrour,F., Carbonell,J., Minguez,P., Goetz,S., Conesa,A., Tarraga,J., Medina,I., Alloza, E., Montaner,D., Dopazo,J (2008) Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucl. Acids Res.,gkn318

    Minguez,P., Goetz,S., Montaner,D., Al-Shahrour,F., Dopazo,J. (2009) SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. Nucleic Acids Res.; doi: 10.1093/nar/gkp402

    Conesa,A., Goetz,S. (2008) Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics. International Journal of Plant Genomics, 2008, 1-12, doi:10.1155/2008/619832

    Other:

     

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