[BiO BB] Blast

[Lance Davidow 617.726-5955]

Sam,

The NCBI gives out the rules and some examples using lynx for how to automate 
submissions to 
QBlast. They recommend that your script wait for the answer to come back from the 
previous query before firing off the next one. I have used PERL to automate large 
numbers of blasts using their directions. Please see their

http://www.ncbi.nlm.nih.gov/BLAST/Doc/urlapi.html

Cheers,
Lance

Quoting Sameer_Mohta <Sameer_Mohta at satyam.com>:

> Hi All,
> 
> can we schedule a batch BLAST job on  NCBI server. 
> I mean i want to run BLAST for 100 sequences. But i don't want to do it
> manually. i want to submit all these sequences in a single shot. is
> there
> any facility available ?
> 
> sam
> 
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Lance Davidow, PhD
Director of Bioinformatics
Dept of Molecular Biology, Wellman 901
Massachusetts General Hospital
Boston, MA 02114
617.726-5955
davidow at molbio.mgh.harvard.edu