[BiO BB] Blast
Lance Davidow 617.726-5955
davidow at molbio.mgh.harvard.edu
Thu Nov 1 12:53:17 EST 2001
Sam,
The NCBI gives out the rules and some examples using lynx for how to automate
submissions to
QBlast. They recommend that your script wait for the answer to come back from the
previous query before firing off the next one. I have used PERL to automate large
numbers of blasts using their directions. Please see their
http://www.ncbi.nlm.nih.gov/BLAST/Doc/urlapi.html
Cheers,
Lance
Quoting Sameer_Mohta <Sameer_Mohta at satyam.com>:
> Hi All,
>
> can we schedule a batch BLAST job on NCBI server.
> I mean i want to run BLAST for 100 sequences. But i don't want to do it
> manually. i want to submit all these sequences in a single shot. is
> there
> any facility available ?
>
> sam
>
> _______________________________________________
> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
> http://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>
>
Lance Davidow, PhD
Director of Bioinformatics
Dept of Molecular Biology, Wellman 901
Massachusetts General Hospital
Boston, MA 02114
617.726-5955
davidow at molbio.mgh.harvard.edu
More information about the BBB
mailing list