[BiO BB] sequence editing software
thomas at cbs.dtu.dk
Fri Aug 16 10:56:43 EDT 2002
"martin goodson" <martingoodson at hotmail.com> writes:
> > > i am looking into sequence editing software for genome finishing and am
> > > trying to find something that can deal with very long sequences (1Mb) or
> > > something that can integrate really easily via java (either or both).
> >Try Artemis program. You can download it from Sanger site.
> thanks for the suggestion but I'm really looking for something that is
> more of an sequence editor than a viewer. its going to have to able to
> look at multiple aligments and edit them etc.
Do you really want to "edit" several Mb long multiple sequence alignments?
If you are trying gap-closure and sequence finishing, look into
Consed from the Phred/Phrap/Consed/Autofinish package.
Sicheritz-Ponten Thomas, Ph.D, thomas at biopython.org (
Center for Biological Sequence Analysis \
BioCentrum-DTU, Technical University of Denmark )
CBS: +45 45 252485 Building 208, DK-2800 Lyngby ##----->
Fax: +45 45 931585 http://www.cbs.dtu.dk/thomas )
... damn arrow eating trees ... (
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