[BiO BB] Windows (XP) sequence analysis software
A.Bossers at id.dlo.nl
Mon Dec 9 04:28:27 EST 2002
alternatively you might want to look at the FREE unix/linux software
available at TIGR. It has tools for seq assembly etc etc etc.
> -----Original Message-----
> From: Julio.Harvey [mailto:harvey at biology.ucsc.edu]
> Sent: Friday, December 06, 2002 11:46 PM
> To: bio_bulletin_board at bioinformatics.org
> Subject: [BiO BB] Windows (XP) sequence analysis software
> Graduate student in evolutionary biology seeks software
> suggestions for
> analyzing thesis data (nucleotide sequences) using Windows or
> (Red Hat)
> After years of using Macintosh based software to analyze my data, I am
> frustrated in my search for PC based equivalents.
> My needs and the Mac programs I have been using to satisfy them are as
> 1) Assembly and editing of contigs from electropherogram data
> (bi-directional sequencing of cloned genes) generated.
> Currently use: AutoAssembler (Mac).
> 2) Alignment of edited gene sequence data in preparation
> for entry
> into PAUP.
> Currently use: Sequence Navigator (Applied
> Biosystems) or ClustalX
> (both Mac).
> 3) Analysis of sequence similarity and subsequent
> production of gene
> phylogenies using recent versions of PAUP (Swofford).
> Currently using PAUP versions for Mac.
> I would very much appreciate any advice leading to the acquisition of
> Windows or even 'windows like' (ie Red Hat) based programs to
> the above. I have heard of and (briefly) used the package
> "GCG" in the
> past but do not currently have the means to purchase the same.
> Do other such softwares exist or must I learn Unix or Linux
> to accomplish
> my goals?
> Many Sincere Thanks,
> Julio Harvey
> Julio Harvey
> Department of Ecology and Evolutionary Biology (EEB)
> A316 Earth and Marine Sciences
> University of California
> Santa Cruz, 95064
> (831) 459-2832 (lab)
> (831) 459-4882 (fax)
> "The way to do is to be". -Lao-Tse
> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
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