[BiO BB] RE: Windows (XP) sequence analysis software (Bossers, A.)

[Remo Sanges]

I thing you should use Linux

you can try the Staden Package
http://www.mrc-lmb.cam.ac.uk/pubseq/staden_home.html

or can use 

Phred for base-calling and quality
Phrap for assembling of genomic sequence or Cap3 for EST
Consed to visualize and editing contigs
http://www.phrap.org 
http://genome.cs.mtu.edu/sas.html

I thing clustal is good for phylogenesis
and the clone open source and better of GCG is at the moment
the EMBOSS package
http://www.emboss.org 

Bye
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Remo Sanges
BioGeM
Gene Expression Core Lab
Via Pietro Castellino 111
80131 Naples
Italy
+39 081 6132303
sanges at biogem.it    sanges at iigb.na.cnr.it
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