[BiO BB] Oracle DBA with MDL experience needed

[Maureen McCarthy]

Oracle Database Administrator with MDL experience needed immediately for a
San Diego biotechnology professional resource company that services bio-tech
companies nationally for the design, deployment, management, customization
and integration of chemical and biological informatics systems.

They specialize in the design and implementation of mission critical
software and datebases for biotechnology and pharmaceutical research.

If you know an Orcale DBS with MDL experience interested in an excellent
career enhancing opportunity in San Diego (must already be eligible to work
in the USA without sponsorship)... please contact Maureen McCarthy at
maureen at mri-fresno.com.

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Sent: Tuesday, July 16, 2002 9:02 AM
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Subject: BiO_Bulletin_Board digest, Vol 1 #290 - 2 msgs


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Today's Topics:

   1. How to get the gene sequence efficiently (Chunlei Wu)
   2. Re: How to get the gene sequence efficiently (rajeshwar  gongalla)

--__--__--

Message: 1
Date: Mon, 15 Jul 2002 13:49:22 -0500
From: Chunlei Wu <newgene at bigfoot.com>
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] How to get the gene sequence efficiently
Reply-To: bio_bulletin_board at bioinformatics.org

Hi, group,
             I have a problem need the help from the group; it may be
easy for the experienced experts here.
             I want to get the gene sequences for a list of genes (with
gene symbol, refseq accession number, etc). I know how to get the gene
sequence one-by-one from NCBI's genome viewer interface. But I am
wondering how I could get the gene sequences based on gene symbol more
efficiently and make it suitable to be commited by a script
automatically. That is a very common task when dealing with the genome
data. I bet there is a good solution already. I hope to get your suggestion.


Thank you in advance.


Chunlei Wu
Cancer Genomic Lab
MD Anderson Cancer Center



--__--__--

Message: 2
Date: 16 Jul 2002 04:04:04 -0000
From: "rajeshwar  gongalla" <bio100 at rediffmail.com>
To: bio_bulletin_board at bioinformatics.org
Cc: "Chunlei Wu" <newgene at bigfoot.com>
Subject: Re: [BiO BB] How to get the gene sequence efficiently
Reply-To: bio_bulletin_board at bioinformatics.org

Hai,
      What I understand from your query is to batch entries. which
is option avaliable in entrez. what all u need to do is make text
file of list of entries and submit as batch. If your question is
different, please let me know. or else if you want to retrieve
 from a genome with different key words try to write a perl
program with patteren matching it will do the rest of work.

with regards,
G.RAJESHWAR
SCIENTIST-C
FRONTIER LIFE SCIENCE LTD.


On Tue, 16 Jul 2002 Chunlei Wu wrote :
>Hi, group,
>             I have a problem need the help from the group; it
>may be easy for the experienced experts here.
>             I want to get the gene sequences for a list of genes
>(with gene symbol, refseq accession number, etc). I know how to
>get the gene sequence one-by-one from NCBI's genome viewer
>interface. But I am wondering how I could get the gene sequences
>based on gene symbol more efficiently and make it suitable to be
>commited by a script automatically. That is a very common task
>when dealing with the genome data. I bet there is a good solution
>already. I hope to get your suggestion.
>
>
>Thank you in advance.
>
>
>Chunlei Wu
>Cancer Genomic Lab
>MD Anderson Cancer Center
>
>
>_______________________________________________
>BiO_Bulletin_Board maillist  -
>BiO_Bulletin_Board at bioinformatics.org
>http://bioinformatics.org/mailman/listinfo/bio_bulletin_board

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