[BiO BB] database for genome...

[Tarak Upadhyaya]

I have the genome on my harddrive, and I'm trying to find ways to put it in 
a data structure/database so I can access it faster, or scan through it 
faster. Currently it takes my cpu 128 seconds to go though chromosome 1. The 
way I coded it, however, seems like there is room for optimization. While I 
do that I also want to think of a way to put it in a database so i can add 
more functionality/speed. Maybe something like a quadratic tree? [binary 
tree, but each node branches out into 4 seperate nodes, representing the 
nucliotide bases].

-Tarak Upadhyaya



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