From the_august at yahoo.com Thu Jan 2 11:32:06 2003 From: the_august at yahoo.com (Its August) Date: Thu, 2 Jan 2003 08:32:06 -0800 (PST) Subject: [BiO BB] Question on the Journal In-Reply-To: Message-ID: <20030102163206.40616.qmail@web40110.mail.yahoo.com> Dear Dr. Miura, Thats exactly not a journal but a series of Volumes(like Methods in Enzymology ) published by M/s HUMANA PRESS,TOTOWA,NJ. The web site for it is: http://www.humanapress.com/BookFinderResults.pasp?txtCatalog=HumanaBooks&series=Methods+in+Molecular+Biology Regards August --- kn_miura at ot.olympus.co.jp wrote: > Dear members; > > Does anybody know the publisher name or URL for the > journal "Methods in > Molecular Biology"? > > A fragment of information will be appreciated. > > Thank you in advance. > > Kunihiko F. Miura. Ph.D. > _______________________________________________ > BiO_Bulletin_Board maillist - > BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board __________________________________________________ Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now. http://mailplus.yahoo.com From drlivesay at csupomona.edu Thu Jan 2 15:05:00 2003 From: drlivesay at csupomona.edu (Dennis Livesay) Date: Thu, 2 Jan 2003 12:05:00 -0800 Subject: [BiO BB] Protein fold prediction Message-ID: <3DDE3530@ganymede.as.csupomona.edu> Hello all, I'm trying to determine the best (threading) software for a large scale, multiple proteome fold prediction study. We have two competing factors that I have to consider... (1) We're especially interested in sequences with little homology to others, but (2) due to the size of our dataset, we need software that is robust and requires little human involvement. >From a cursory assesment of the available software, it appears that PROSPECT meets the first requirement, but doesn't do as well with the second. On the other hand, 3D-PSSM or 123D seem to be the opposite. Any advice??? Thanks in advance, Dennis -------------------------------------------------------------------- Dr. Dennis Livesay Department of Chemistry Cal Poly, Pomona phone: 909-869-4409 email: drlivesay at csupomona.edu http://www.csupomona.edu/~drlivesay/ From ravi_mayreddy at yahoo.com Thu Jan 2 15:55:44 2003 From: ravi_mayreddy at yahoo.com (ravi mayreddy) Date: Thu, 2 Jan 2003 12:55:44 -0800 (PST) Subject: [BiO BB] Distance Education Program in Bioinformatics In-Reply-To: Message-ID: <20030102205544.58701.qmail@web13205.mail.yahoo.com> Pls send details, location etc. by mail. -Ravi Mukesh Sharma wrote: Admission Notice- Academy of Genomics & Applied Biology The new emerging field Bioinformatics is an integration of mathematical, statistical and computer methods to analyze biological, biochemical and biophysical data. Than Bioinformatics required a best knowledge not only in biology but in mathematics too. At that time many private institution in india providing bioinformatics education but offered courses are totaly dedicated to biological stream students, so this is necessary to know to actual requirments of bioinformatics field. AGAB understand all the requirment of the real bioinformatics world and designed two bioinformatics course based on the international standards and market requirments. Course offered by AGAB have the best mixture of biology & mathamatics to get best growth in the market. AGAB is trying to get best industrial interaction to provide best bioinformatics potential in India as well as in international market too. \"Academy of Genomics & Applied Biology\" is the non-profit making institute conducting the distance learning program in Bioinformatics for promoting high-end quality education in the field of Bioinformatics through its two program: 1) Advance Diploma in Bioinformatics (Hons.) Duration : 18 months Fee : 4500/- (4000/- for SC/ST/Govt./Defence prof) For Foreign Students: US$ 350 Elig. : Graduation in Science Stream with min 50% marks 2) Diploma in Bioinformatics Duration : 12 months Fee : 3500/- (3000/- for SC/ST/Govt./Defence prof) For Foreign Students: US$ 250 Elig. : 10+2 in Science Stream with min 50% marks The aim of these programs is to provide bioinformatics professionals for difference pharmacuticals/IT sectors/R&D Dept./Govt. & Non Govt. Organisations. Course commencing from 31st of Jan. 2003 How to apply Application form and Brochure: The online application form-course details can be obtain through the e-mail. (For hardcopy send e-mail with your postal address) Soon we are going to provide online registration facility through our website. For more information & any query write us: agabindia at hotmail.com Thanx, Vineet Massey Manager-Academics _________________________________________________________________ MSN 8: advanced junk mail protection and 3 months FREE*. http://join.msn.com/?page=features/junkmail&xAPID=42&PS=47575&PI=7324&DI=7474&SU= http://www.hotmail.msn.com/cgi-bin/getmsg&HL=1216hotmailtaglines_advancedjmf_3mf _______________________________________________ BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org https://bioinformatics.org/mailman/listinfo/bio_bulletin_board --------------------------------- Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now -------------- next part -------------- An HTML attachment was scrubbed... URL: From pooja_jain25 at hotmail.com Fri Jan 3 00:47:23 2003 From: pooja_jain25 at hotmail.com (Pooja Jain) Date: Fri, 03 Jan 2003 11:17:23 +0530 Subject: [BiO BB] Distance Education Program in Bioinformatics Message-ID: Hi, As this is a distance education program, I assume a bunch of books would be provided to the registered students. Is there any option to arrange some contact classes to solve the doubts and difficulties that would arise while reading? I would also like to know the location of the Institute and how old is this course? Thank you Pooja >From: ravi mayreddy >Reply-To: bio_bulletin_board at bioinformatics.org >To: bio_bulletin_board at bioinformatics.org >Subject: Re: [BiO BB] Distance Education Program in Bioinformatics >Date: Thu, 2 Jan 2003 12:55:44 -0800 (PST) > > >Pls send details, location etc. by mail. > >-Ravi > Mukesh Sharma wrote: >Admission Notice- >Academy of Genomics & Applied Biology > >The new emerging field Bioinformatics is an integration of mathematical, >statistical and computer methods to analyze biological, biochemical and >biophysical data. Than Bioinformatics required a best knowledge not only in >biology but in mathematics too. At that time many private institution in >india providing bioinformatics education but offered courses are totaly >dedicated to biological stream students, so this is necessary to know to >actual requirments of bioinformatics field. > >AGAB understand all the requirment of the real bioinformatics world and >designed two bioinformatics course based on the international standards and >market requirments. Course offered by AGAB have the best mixture of biology >& mathamatics to get best growth in the market. > >AGAB is trying to get best industrial interaction to provide best >bioinformatics potential in India as well as in international market too. > >\"Academy of Genomics & Applied Biology\" is the non-profit making >institute >conducting the distance learning program in Bioinformatics for promoting >high-end quality education in the field of Bioinformatics through its two >program: > >1) Advance Diploma in Bioinformatics (Hons.) >Duration : 18 months >Fee : 4500/- (4000/- for SC/ST/Govt./Defence prof) >For Foreign Students: US$ 350 >Elig. : Graduation in Science Stream with min 50% marks > >2) Diploma in Bioinformatics >Duration : 12 months >Fee : 3500/- (3000/- for SC/ST/Govt./Defence prof) >For Foreign Students: US$ 250 >Elig. : 10+2 in Science Stream with min 50% marks > >The aim of these programs is to provide bioinformatics professionals for >difference pharmacuticals/IT sectors/R&D Dept./Govt. & Non Govt. >Organisations. > >Course commencing from 31st of Jan. 2003 > >How to apply >Application form and Brochure: >The online application form-course details can be obtain through the >e-mail. >(For hardcopy send e-mail with your postal address) >Soon we are going to provide online registration facility through our >website. > >For more information & any query write us: >agabindia at hotmail.com > >Thanx, >Vineet Massey >Manager-Academics > > > > > > > > > >_________________________________________________________________ >MSN 8: advanced junk mail protection and 3 months FREE*. >http://join.msn.com/?page=features/junkmail&xAPID=42&PS=47575&PI=7324&DI=7474&SU= >http://www.hotmail.msn.com/cgi-bin/getmsg&HL=1216hotmailtaglines_advancedjmf_3mf > >_______________________________________________ >BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org >https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > > >--------------------------------- >Do you Yahoo!? >Yahoo! Mail Plus - Powerful. Affordable. Sign up now _________________________________________________________________ The new MSN 8: smart spam protection and 2 months FREE* http://join.msn.com/?page=features/junkmail From lhewei at TripathImaging.com Fri Jan 3 12:08:16 2003 From: lhewei at TripathImaging.com (Li, Hewei) Date: Fri, 3 Jan 2003 12:08:16 -0500 Subject: [BiO BB] RE: BiO_Bulletin_Board digest, Vol 1 #387 - 3 msgs Message-ID: <235AEBD0012949478E0E2FB3449D7A7D014FF351@tpe-exch.tripathimaging.com> This message is a reply to message 1 below. Hi Dennis, You might want to try UCLA-DOE Fold Server, PSIPred or Bioinbgu's server. Good luck, Hewei -----Original Message----- From: bio_bulletin_board-request at bioinformatics.org [mailto:bio_bulletin_board-request at bioinformatics.org] Sent: Friday, January 03, 2003 12:01 PM To: bio_bulletin_board at bioinformatics.org Subject: BiO_Bulletin_Board digest, Vol 1 #387 - 3 msgs Send BiO_Bulletin_Board mailing list submissions to bio_bulletin_board at bioinformatics.org To subscribe or unsubscribe via the World Wide Web, visit https://bioinformatics.org/mailman/listinfo/bio_bulletin_board or, via email, send a message with subject or body 'help' to bio_bulletin_board-request at bioinformatics.org You can reach the person managing the list at bio_bulletin_board-admin at bioinformatics.org When replying, please edit your Subject line so it is more specific than "Re: Contents of BiO_Bulletin_Board digest..." Today's Topics: 1. Protein fold prediction (Dennis Livesay) 2. Re: Distance Education Program in Bioinformatics (ravi mayreddy) 3. Re: Distance Education Program in Bioinformatics (Pooja Jain) --__--__-- Message: 1 Date: Thu, 2 Jan 2003 12:05:00 -0800 From: Dennis Livesay To: bio bulletin Subject: [BiO BB] Protein fold prediction Reply-To: bio_bulletin_board at bioinformatics.org Hello all, I'm trying to determine the best (threading) software for a large scale, multiple proteome fold prediction study. We have two competing factors that I have to consider... (1) We're especially interested in sequences with little homology to others, but (2) due to the size of our dataset, we need software that is robust and requires little human involvement. >From a cursory assesment of the available software, it appears that PROSPECT meets the first requirement, but doesn't do as well with the second. On the other hand, 3D-PSSM or 123D seem to be the opposite. Any advice??? Thanks in advance, Dennis -------------------------------------------------------------------- Dr. Dennis Livesay Department of Chemistry Cal Poly, Pomona phone: 909-869-4409 email: drlivesay at csupomona.edu http://www.csupomona.edu/~drlivesay/ --__--__-- Message: 2 Date: Thu, 2 Jan 2003 12:55:44 -0800 (PST) From: ravi mayreddy Subject: Re: [BiO BB] Distance Education Program in Bioinformatics To: bio_bulletin_board at bioinformatics.org Reply-To: bio_bulletin_board at bioinformatics.org --0-474254075-1041540944=:58620 Content-Type: text/plain; charset=us-ascii Pls send details, location etc. by mail. -Ravi Mukesh Sharma wrote: Admission Notice- Academy of Genomics & Applied Biology The new emerging field Bioinformatics is an integration of mathematical, statistical and computer methods to analyze biological, biochemical and biophysical data. Than Bioinformatics required a best knowledge not only in biology but in mathematics too. At that time many private institution in india providing bioinformatics education but offered courses are totaly dedicated to biological stream students, so this is necessary to know to actual requirments of bioinformatics field. AGAB understand all the requirment of the real bioinformatics world and designed two bioinformatics course based on the international standards and market requirments. Course offered by AGAB have the best mixture of biology & mathamatics to get best growth in the market. AGAB is trying to get best industrial interaction to provide best bioinformatics potential in India as well as in international market too. \"Academy of Genomics & Applied Biology\" is the non-profit making institute conducting the distance learning program in Bioinformatics for promoting high-end quality education in the field of Bioinformatics through its two program: 1) Advance Diploma in Bioinformatics (Hons.) Duration : 18 months Fee : 4500/- (4000/- for SC/ST/Govt./Defence prof) For Foreign Students: US$ 350 Elig. : Graduation in Science Stream with min 50% marks 2) Diploma in Bioinformatics Duration : 12 months Fee : 3500/- (3000/- for SC/ST/Govt./Defence prof) For Foreign Students: US$ 250 Elig. : 10+2 in Science Stream with min 50% marks The aim of these programs is to provide bioinformatics professionals for difference pharmacuticals/IT sectors/R&D Dept./Govt. & Non Govt. Organisations. Course commencing from 31st of Jan. 2003 How to apply Application form and Brochure: The online application form-course details can be obtain through the e-mail. (For hardcopy send e-mail with your postal address) Soon we are going to provide online registration facility through our website. For more information & any query write us: agabindia at hotmail.com Thanx, Vineet Massey Manager-Academics _________________________________________________________________ MSN 8: advanced junk mail protection and 3 months FREE*. http://join.msn.com/?page=features/junkmail&xAPID=42&PS=47575&PI=7324&DI=747 4&SU= http://www.hotmail.msn.com/cgi-bin/getmsg&HL=1216hotmailtaglines_advancedjmf _3mf _______________________________________________ BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org https://bioinformatics.org/mailman/listinfo/bio_bulletin_board --------------------------------- Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now --0-474254075-1041540944=:58620 Content-Type: text/html; charset=us-ascii

Pls send details, location etc. by mail.

 

-Ravi

 Mukesh Sharma <agabindia at hotmail.com> wrote:


Admission Notice-
Academy of Genomics & Applied Biology

The new emerging field Bioinformatics is an integration of mathematical,
statistical and computer methods to analyze biological, biochemical and
biophysical data. Than Bioinformatics required a best knowledge not only in
biology but in mathematics too. At that time many private institution in
india providing bioinformatics education but offered courses are totaly
dedicated to biological stream students, so this is necessary to know to
actual requirments of bioinformatics field.

AGAB understand all the requirment of the real bioinformatics world and
designed two bioinformatics course based on the international standards and
market requirments. Course offered by AGAB have the best mixture of biology
& mathamatics to get best growth in the market.

AGAB is trying to g et best industrial interaction to provide best
bioinformatics potential in India as well as in international market too.

\"Academy of Genomics & Applied Biology\" is the non-profit making institute
conducting the distance learning program in Bioinformatics for promoting
high-end quality education in the field of Bioinformatics through its two
program:

1) Advance Diploma in Bioinformatics (Hons.)
Duration : 18 months
Fee : 4500/- (4000/- for SC/ST/Govt./Defence prof)
For Foreign Students: US$ 350
Elig. : Graduation in Science Stream with min 50% marks

2) Diploma in Bioinformatics
Duration : 12 months
Fee : 3500/- (3000/- for SC/ST/Govt./Defence prof)
For Foreign Students: US$ 250
Elig. : 10+2 in Science Stream with min 50% marks

The aim of these programs is to provide bioinformatics professionals for
difference pharmacuticals/IT sectors/R&D Dept./Govt. & Non Govt.
Organisations.

Cou rse commencing from 31st of Jan. 2003

How to apply
Application form and Brochure:
The online application form-course details can be obtain through the e-mail.
(For hardcopy send e-mail with your postal address)
Soon we are going to provide online registration facility through our
website.

For more information & any query write us:
agabindia at hotmail.com

Thanx,
Vineet Massey
Manager-Academics









_________ ________________________________________________________
MSN 8: advanced junk mail protection and 3 months FREE*.
http://join.msn.com/?page=features/junkmail&xAPID=42&PS=47575&am p;PI=7324&DI=7474&SU=
http://www.hotmail.msn.com/cgi-bin/getmsg&HL=1216hotmailtaglines_adv ancedjmf_3mf

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Yahoo! Mail Plus - Powerful. Affordable. Sign up now --0-474254075-1041540944=:58620-- --__--__-- Message: 3 From: "Pooja Jain" To: bio_bulletin_board at bioinformatics.org Subject: Re: [BiO BB] Distance Education Program in Bioinformatics Date: Fri, 03 Jan 2003 11:17:23 +0530 Reply-To: bio_bulletin_board at bioinformatics.org Hi, As this is a distance education program, I assume a bunch of books would be provided to the registered students. Is there any option to arrange some contact classes to solve the doubts and difficulties that would arise while reading? I would also like to know the location of the Institute and how old is this course? Thank you Pooja >From: ravi mayreddy >Reply-To: bio_bulletin_board at bioinformatics.org >To: bio_bulletin_board at bioinformatics.org >Subject: Re: [BiO BB] Distance Education Program in Bioinformatics >Date: Thu, 2 Jan 2003 12:55:44 -0800 (PST) > > >Pls send details, location etc. by mail. > >-Ravi > Mukesh Sharma wrote: >Admission Notice- >Academy of Genomics & Applied Biology > >The new emerging field Bioinformatics is an integration of mathematical, >statistical and computer methods to analyze biological, biochemical and >biophysical data. Than Bioinformatics required a best knowledge not only in >biology but in mathematics too. At that time many private institution in >india providing bioinformatics education but offered courses are totaly >dedicated to biological stream students, so this is necessary to know to >actual requirments of bioinformatics field. > >AGAB understand all the requirment of the real bioinformatics world and >designed two bioinformatics course based on the international standards and >market requirments. Course offered by AGAB have the best mixture of biology >& mathamatics to get best growth in the market. > >AGAB is trying to get best industrial interaction to provide best >bioinformatics potential in India as well as in international market too. > >\"Academy of Genomics & Applied Biology\" is the non-profit making >institute >conducting the distance learning program in Bioinformatics for promoting >high-end quality education in the field of Bioinformatics through its two >program: > >1) Advance Diploma in Bioinformatics (Hons.) >Duration : 18 months >Fee : 4500/- (4000/- for SC/ST/Govt./Defence prof) >For Foreign Students: US$ 350 >Elig. : Graduation in Science Stream with min 50% marks > >2) Diploma in Bioinformatics >Duration : 12 months >Fee : 3500/- (3000/- for SC/ST/Govt./Defence prof) >For Foreign Students: US$ 250 >Elig. : 10+2 in Science Stream with min 50% marks > >The aim of these programs is to provide bioinformatics professionals for >difference pharmacuticals/IT sectors/R&D Dept./Govt. & Non Govt. >Organisations. > >Course commencing from 31st of Jan. 2003 > >How to apply >Application form and Brochure: >The online application form-course details can be obtain through the >e-mail. >(For hardcopy send e-mail with your postal address) >Soon we are going to provide online registration facility through our >website. > >For more information & any query write us: >agabindia at hotmail.com > >Thanx, >Vineet Massey >Manager-Academics > > > > > > > > > >_________________________________________________________________ >MSN 8: advanced junk mail protection and 3 months FREE*. >http://join.msn.com/?page=features/junkmail&xAPID=42&PS=47575&PI=7324&DI=74 74&SU= >http://www.hotmail.msn.com/cgi-bin/getmsg&HL=1216hotmailtaglines_advancedjm f_3mf > >_______________________________________________ >BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org >https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > > >--------------------------------- >Do you Yahoo!? >Yahoo! Mail Plus - Powerful. Affordable. Sign up now _________________________________________________________________ The new MSN 8: smart spam protection and 2 months FREE* http://join.msn.com/?page=features/junkmail --__--__-- _______________________________________________ BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org https://bioinformatics.org/mailman/listinfo/bio_bulletin_board End of BiO_Bulletin_Board Digest From jeff at bioinformatics.org Fri Jan 3 20:48:02 2003 From: jeff at bioinformatics.org (J.W. Bizzaro) Date: Fri, 03 Jan 2003 20:48:02 -0500 Subject: [BiO BB] (no subject) References: <200212240635.MAA13041@WS0005.indiatimes.com> Message-ID: <3E163D52.31C77F36@bioinformatics.org> seabi wrote: > > HOW TO CO-RELATE BIO WITH I.T AND THE SOFTWARES/LINKS WHICH CAN BE DOWNLOADED > ON THE SYSTEM MAY PLEASE BE INFORMED. > > I HAVE SOME IDEA ABOUT RASMOL AND SWISSpdb. WILL U PLEASE EXPLAIN OTHER > SIMILAR LINKS/SOFTWARES TO OPERATE AND WORK. Hi Seabi. I'm not clear on what you are asking. Please give us more detail. Cheers. Jeff -- J.W. Bizzaro jeff at bioinformatics.org President, Bioinformatics.Org http://bioinformatics.org/~jeff "As we enjoy great advantages from the inventions of others, we should be glad of an opportunity to serve others by any invention of ours; and this we should do freely and generously." -- Benjamin Franklin -- From sarang0631 at yahoo.com Sat Jan 4 03:04:26 2003 From: sarang0631 at yahoo.com (sarang salunkhe) Date: Sat, 4 Jan 2003 00:04:26 -0800 (PST) Subject: [BiO BB] (no subject) In-Reply-To: <20021228060647.81992.qmail@web41214.mail.yahoo.com> Message-ID: <20030104080426.10767.qmail@web40016.mail.yahoo.com> hi can you do one thing ? i want to see ur model can you do it for me/ from enzymes can you model more complex structures like hormones like testosteron/ Progesteron/estrogen etc okj bye sarang padma priya wrote:hello members, i have modeled the enzyme nitrogenase using comparitive modeling procedures. i know the active site of my model now. can anybody tell me what else i can do? thank you priya. __________________________________________________ Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now. http://mailplus.yahoo.com _______________________________________________ BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org https://bioinformatics.org/mailman/listinfo/bio_bulletin_board --------------------------------- Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now -------------- next part -------------- An HTML attachment was scrubbed... URL: From tibs at stat.Stanford.EDU Mon Jan 6 00:52:42 2003 From: tibs at stat.Stanford.EDU (Rob Tibshirani) Date: Sun, 5 Jan 2003 21:52:42 -0800 (PST) Subject: [BiO BB] Data mining and bioinformatics short course Message-ID: <200301060552.VAA70563@rgmiller.Stanford.EDU> Short course: Statistical Learning and Data Mining Trevor Hastie and Robert Tibshirani Stanford University Sheraton Hotel, Palo Alto, California February 27-28, 2003 This two-day course gives a detailed overview of statistical models for data mining, inference and prediction. This sequel to our popular Modern Regression and Classification course covers many new areas of unsupervised learning and data mining, and gives an in-depth treatment of some of the hottest tools in supervised learning. Applications to genomics, marketing and engineering are discussed. The first course is not a pre-requisite for this new course. Much of the material is based on our recent book: Elements of Statistical Learning: Data Mining, Inference and Prediction, Hastie, Tibshirani & Friedman, Springer-Verlag, 2001. http://www-stat.stanford.edu/ElemStatLearn A copy of this book will be given to all attendees. For more information on the course, and registration information, go to the site http://www-stat.stanford.edu/~hastie/mrc.html ********************************************** Rob Tibshirani, Dept of Health Research & Policy and Dept of Statistics HRP Redwood Bldg Stanford University Stanford, California 94305-5405 phone: HRP: 650-723-7264 (Voice mail), Statistics 650-723-1185 FAX 650-725-8977 tibs at stat.stanford.edu http://www-stat.stanford.edu/~tibs From mgollery at unr.edu Mon Jan 6 12:27:20 2003 From: mgollery at unr.edu (Martin Gollery) Date: Mon, 6 Jan 2003 09:27:20 -0800 Subject: [BiO BB] Microarray probe design In-Reply-To: <200301060552.VAA70563@rgmiller.Stanford.EDU> References: <200301060552.VAA70563@rgmiller.Stanford.EDU> Message-ID: <1041874040.3e19bc78a5210@webmail.unr.edu> Hello, I am looking for software to select short Oligos for gene expression arrays. I have been looking into a program called ProbeSelect- does anyone have any experience with this one? Is there a better one available? Thanks, marty Martin Gollery Associate Director of Bioinformatics University of Nevada at Reno Dept. of Biochemistry / MS200 (775)784-6048 ------------------------------------------------- This mail sent through https://webmail.unr.edu From hjm at tacgi.com Mon Jan 6 15:04:51 2003 From: hjm at tacgi.com (Harry Mangalam) Date: Mon, 06 Jan 2003 12:04:51 -0800 Subject: [BiO BB] Microarray probe design In-Reply-To: <1041874040.3e19bc78a5210@webmail.unr.edu> References: <200301060552.VAA70563@rgmiller.Stanford.EDU> <1041874040.3e19bc78a5210@webmail.unr.edu> Message-ID: <3E19E163.3010601@tacgi.com> Hi Marty, Depending on what you're looking to do, you might give this a try: http://promoter.ics.uci.edu/Primers/ (see manual for details): http://promoter.ics.uci.edu/Primers/manual.htm Harry Martin Gollery wrote: > Hello, > > I am looking for software to select short Oligos for gene expression arrays. > I have been looking into a program called ProbeSelect- does anyone have any > experience with this one? Is there a better one available? > > Thanks, > marty > > > Martin Gollery > Associate Director of Bioinformatics > University of Nevada at Reno > Dept. of Biochemistry / MS200 > (775)784-6048 > > > ------------------------------------------------- > This mail sent through https://webmail.unr.edu > > _______________________________________________ > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > > -- Cheers, Harry Harry J Mangalam - 949 856 2847 (v&f) - hjm at tacgi.com <> From sasa at muh.biglobe.ne.jp Mon Jan 6 17:47:05 2003 From: sasa at muh.biglobe.ne.jp (Takeshi Sasayama) Date: Tue, 7 Jan 2003 07:47:05 +0900 Subject: [BiO BB] Microarray probe design Message-ID: Hi Martin, I think Array designer from Premier Biosoft is one of the most famous software for this purpose. http://www.premierbiosoft.com/dnamicroarray/dnamicroarray.html Also there are several other softwares described in the following link list. http://ihome.cuhk.edu.hk/~b400559/arraysoft_probe.html Takeshi Sasayama Martin Gollery wrote: > Hello, > > I am looking for software to select short Oligos for gene expression arrays. > I have been looking into a program called ProbeSelect- does anyone have any > experience with this one? Is there a better one available? > > Thanks, > marty > > > Martin Gollery > Associate Director of Bioinformatics > University of Nevada at Reno > Dept. of Biochemistry / MS200 > (775)784-6048 > From seabi at indiatimes.com Tue Jan 7 04:46:44 2003 From: seabi at indiatimes.com (seabi) Date: Tue, 07 Jan 2003 15:16:44 +0530 Subject: [BiO BB] Re: help on biostat courseware Message-ID: <200301070938.PAA18307@WS0005.indiatimes.com> dear members, we teach our students bioinformatics on Post Graduate and Graduate level under diploma certification. I would request members to kindly give, if possible, the courseware on subject USE OF STATISTICAL METHODOLOGY IN BIOINFORMATICS with books/tutorials. thanks in advance. seabi Get Your Private, Free E-mail from Indiatimes at http://email.indiatimes.com Buy the best in Movies at http://www.videos.indiatimes.com Now bid just 7 Days in Advance and get Huge Discounts on Indian Airlines Flights. So log on to http://indianairlines.indiatimes.com and Bid Now ! -------------- next part -------------- An HTML attachment was scrubbed... URL: From vishal.gandhi at ranbaxy.com Tue Jan 7 22:21:24 2003 From: vishal.gandhi at ranbaxy.com (VISHAL GANDHI) Date: Wed, 8 Jan 2003 08:51:24 +0530 Subject: [BiO BB] RE: BiO_Bulletin_Board digest, Vol 1 #390 - 4 msgs Message-ID: <3AC70875A08ED511AED20002557C54BB01E198A0@gur_msg_01.ranbaxy.com> -----Original Message----- From: bio_bulletin_board-request at bioinformatics.org [mailto:bio_bulletin_board-request at bioinformatics.org] Sent: Tuesday, January 07, 2003 10:31 PM To: bio_bulletin_board at bioinformatics.org Subject: BiO_Bulletin_Board digest, Vol 1 #390 - 4 msgs Send BiO_Bulletin_Board mailing list submissions to bio_bulletin_board at bioinformatics.org To subscribe or unsubscribe via the World Wide Web, visit https://bioinformatics.org/mailman/listinfo/bio_bulletin_board or, via email, send a message with subject or body 'help' to bio_bulletin_board-request at bioinformatics.org You can reach the person managing the list at bio_bulletin_board-admin at bioinformatics.org When replying, please edit your Subject line so it is more specific than "Re: Contents of BiO_Bulletin_Board digest..." Today's Topics: 1. Microarray probe design (Martin Gollery) 2. Re: Microarray probe design (Harry Mangalam) 3. Re: Microarray probe design (Takeshi Sasayama) 4. Re: help on biostat courseware (seabi) --__--__-- Message: 1 Date: Mon, 6 Jan 2003 09:27:20 -0800 From: Martin Gollery To: bio_bulletin_board at bioinformatics.org Subject: [BiO BB] Microarray probe design Reply-To: bio_bulletin_board at bioinformatics.org Hello, I am looking for software to select short Oligos for gene expression arrays. I have been looking into a program called ProbeSelect- does anyone have any experience with this one? Is there a better one available? Thanks, marty Martin Gollery Associate Director of Bioinformatics University of Nevada at Reno Dept. of Biochemistry / MS200 (775)784-6048 ------------------------------------------------- This mail sent through https://webmail.unr.edu --__--__-- Message: 2 Date: Mon, 06 Jan 2003 12:04:51 -0800 From: Harry Mangalam To: bio_bulletin_board at bioinformatics.org, Martin Gollery Subject: Re: [BiO BB] Microarray probe design Reply-To: bio_bulletin_board at bioinformatics.org Hi Marty, Depending on what you're looking to do, you might give this a try: http://promoter.ics.uci.edu/Primers/ (see manual for details): http://promoter.ics.uci.edu/Primers/manual.htm Harry Martin Gollery wrote: > Hello, > > I am looking for software to select short Oligos for gene expression arrays. > I have been looking into a program called ProbeSelect- does anyone have any > experience with this one? Is there a better one available? > > Thanks, > marty > > > Martin Gollery > Associate Director of Bioinformatics > University of Nevada at Reno > Dept. of Biochemistry / MS200 > (775)784-6048 > > > ------------------------------------------------- > This mail sent through https://webmail.unr.edu > > _______________________________________________ > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > > -- Cheers, Harry Harry J Mangalam - 949 856 2847 (v&f) - hjm at tacgi.com <> --__--__-- Message: 3 From: "Takeshi Sasayama" To: Subject: Re: [BiO BB] Microarray probe design Date: Tue, 7 Jan 2003 07:47:05 +0900 Reply-To: bio_bulletin_board at bioinformatics.org Hi Martin, I think Array designer from Premier Biosoft is one of the most famous software for this purpose. http://www.premierbiosoft.com/dnamicroarray/dnamicroarray.html Also there are several other softwares described in the following link list. http://ihome.cuhk.edu.hk/~b400559/arraysoft_probe.html Takeshi Sasayama Martin Gollery wrote: > Hello, > > I am looking for software to select short Oligos for gene expression arrays. > I have been looking into a program called ProbeSelect- does anyone have any > experience with this one? Is there a better one available? > > Thanks, > marty > > > Martin Gollery > Associate Director of Bioinformatics > University of Nevada at Reno > Dept. of Biochemistry / MS200 > (775)784-6048 > --__--__-- Message: 4 From: "seabi" To: Date: Tue, 07 Jan 2003 15:16:44 +0530 Subject: [BiO BB] Re: help on biostat courseware Reply-To: bio_bulletin_board at bioinformatics.org --=_MAILER_ATTACH_BOUNDARY1_2003172151644233665123 Content-Type: text/plain; charset=us-ascii dear members, we teach our students bioinformatics on Post Graduate and Graduate level under diploma certification. I would request members to kindly give, if possible, the courseware on subject USE OF STATISTICAL METHODOLOGY IN BIOINFORMATICS with books/tutorials. thanks in advance. seabi Get Your Private, Free E-mail from Indiatimes at http://email.indiatimes.com Buy the best in Movies at http://www.videos.indiatimes.com Now bid just 7 Days in Advance and get Huge Discounts on Indian Airlines Flights. So log on to http://indianairlines.indiatimes.com and Bid Now ! --=_MAILER_ATTACH_BOUNDARY1_2003172151644233665123 Content-Type: text/html; charset=us-ascii

dear members,

we teach our students bioinformatics on Post Graduate and Graduate level under diploma certification.

I would request members to kindly give, if possible, the courseware on subject USE OF STATISTICAL METHODOLOGY IN BIOINFORMATICS with books/tutorials.

thanks in advance.

seabi 


Get Your Private, Free E-mail from Indiatimes at http://email.indiatimes.com
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Now bid just 7 Days in Advance and get Huge Discounts on Indian Airlines Flights. So log on to http://indianairlines.indiatimes.com and Bid Now ! --=_MAILER_ATTACH_BOUNDARY1_2003172151644233665123-- --__--__-- _______________________________________________ BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org https://bioinformatics.org/mailman/listinfo/bio_bulletin_board End of BiO_Bulletin_Board Digest From tmi0m0 at spi.power.uni-essen.de Wed Jan 8 07:18:20 2003 From: tmi0m0 at spi.power.uni-essen.de (=?iso-8859-1?Q?Johannes_H=FCsing?=) Date: Wed, 8 Jan 2003 13:18:20 +0100 Subject: [BiO BB] Microarray probe design In-Reply-To: ; from Takeshi Sasayama on Tue, Jan 07, 2003 at 07:47:05AM +0900 References: Message-ID: <20030108131820.17528@spi.power.uni-essen.de> While we're advocating closed source software here anyway, no matter what the charta of this list, you might also want to take a look at http://www.isenseit.de/projekte/isenseit/index.php/49 Greetings Johannes From pajailwala at yahoo.com Wed Jan 8 10:27:04 2003 From: pajailwala at yahoo.com (Parthav Jailwala) Date: Wed, 8 Jan 2003 07:27:04 -0800 (PST) Subject: [BiO BB] Microarray probe design In-Reply-To: <20030108131820.17528@spi.power.uni-essen.de> Message-ID: <20030108152704.71803.qmail@web12301.mail.yahoo.com> HI JOhannes, Is there an english version of this website ? Thanks Parthav Jailwala Johannes_H?sing wrote:While we're advocating closed source software here anyway, no matter what the charta of this list, you might also want to take a look at http://www.isenseit.de/projekte/isenseit/index.php/49 Greetings Johannes _______________________________________________ BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org https://bioinformatics.org/mailman/listinfo/bio_bulletin_board ---------------------------------------------------------------------------------------- He who lives without discipline, dies without honor. Icelandic proverb ---------------------------------------------------------------------------------------- Parthav Jailwala,Analyst/Project Programmer,Max McGee National Centre for Juvenile Diabetes,Pediatrics(Endocrinology), Medical College of Wisconsin, Milwaukee, WI. Ph : 414-456-8269,E-mail : pjailwal at mcw.edu, Alternate E-mail : pajailwala at yahoo.com --------------------------------- Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now -------------- next part -------------- An HTML attachment was scrubbed... URL: From helge.tippmann at risoe.dk Thu Jan 9 09:08:39 2003 From: helge.tippmann at risoe.dk (helge.tippmann at risoe.dk) Date: Thu, 09 Jan 2003 15:08:39 +0100 Subject: [BiO BB] public microarray datasets Message-ID: <7F6BCF6B9307D311980C0090273C746C05264F6E@cssrv1> Does anybody know where to get hand on microarray data (prefereably in .cel format), especially for plant experiments? So far we have only found sth. in SMD. It is for a non-profit projects of some students. regards, Helge ---------------------------------------------------------------------------- -------- Helge Tippmann Risoe National Laboratory Plant Research Department (PRD) Resistance Biology Programme (PLR) Building 330 Fredriksborgvej 399, P.O. Box 49 DK-4000 Roskilde From mgollery at unr.edu Thu Jan 9 14:04:01 2003 From: mgollery at unr.edu (Martin Gollery) Date: Thu, 9 Jan 2003 11:04:01 -0800 Subject: [BiO BB] public microarray datasets In-Reply-To: <7F6BCF6B9307D311980C0090273C746C05264F6E@cssrv1> References: <7F6BCF6B9307D311980C0090273C746C05264F6E@cssrv1> Message-ID: <1042139041.3e1dc7a1d93e4@webmail.unr.edu> Try the Gene Expression Omnibus at NCBI (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=geo) or arrayExpress at EBI (http://www.ebi.ac.uk/microarray/ArrayExpress/arrayexpress.html) although I don't know what formats they support... Cheers, Marty Quoting helge.tippmann at risoe.dk: > Does anybody know where to get hand on microarray data (prefereably in .cel > format), especially for plant experiments? So far we have only found sth. > in > SMD. It is for a non-profit projects of some students. > > regards, > > Helge > > ---------------------------------------------------------------------------- > -------- > Helge Tippmann > Risoe National Laboratory > Plant Research Department (PRD) > Resistance Biology Programme (PLR) > Building 330 > Fredriksborgvej 399, P.O. Box 49 > DK-4000 Roskilde > > > > > > _______________________________________________ > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > Martin Gollery Associate Director of Bioinformatics University of Nevada at Reno Dept. of Biochemistry / MS200 (775)784-6048 ------------------------------------------------- This mail sent through https://webmail.unr.edu From tmi0m0 at spi.power.uni-essen.de Thu Jan 9 03:05:57 2003 From: tmi0m0 at spi.power.uni-essen.de (=?iso-8859-1?Q?Johannes_H=FCsing?=) Date: Thu, 9 Jan 2003 09:05:57 +0100 Subject: [BiO BB] Microarray probe design In-Reply-To: <20030108152704.71803.qmail@web12301.mail.yahoo.com>; from Parthav Jailwala on Wed, Jan 08, 2003 at 07:27:04AM -0800 References: <20030108131820.17528@spi.power.uni-essen.de> <20030108152704.71803.qmail@web12301.mail.yahoo.com> Message-ID: <20030109090557.12326@spi.power.uni-essen.de> On Wed 2003-01-08 (07:27), Parthav Jailwala wrote: > > HI JOhannes, > Is there an english version of this website ? > Thanks http://www.isenseit.de/index.php/49/lang=2 > Greetings Johannes From lhewei at TripathImaging.com Thu Jan 9 08:51:37 2003 From: lhewei at TripathImaging.com (Li, Hewei) Date: Thu, 9 Jan 2003 08:51:37 -0500 Subject: [BiO BB] Help --- Signal pathway tools/databases Message-ID: <235AEBD0012949478E0E2FB3449D7A7D014FF366@tpe-exch.tripathimaging.com> Dear group, I am in an attempt to search for all the genes which are possibly up-regulated by E2F transcript factor. Could anyone suggest any relevant data mining tools or databases. http://wwwmgs.bionet.nsc.ru/mgs/programs/freq/e2f_freq.html seems a cool tool to predict E2F transcription factor binding DNA-site. But it is a kind of hard to understand the outcomes. Does anybody have experience with it? Many thanks, Hewei From Samuel.J.Stearns at Dartmouth.EDU Fri Jan 10 12:07:09 2003 From: Samuel.J.Stearns at Dartmouth.EDU (Samuel J. Stearns) Date: 10 Jan 2003 12:07:09 EST Subject: [BiO BB] Re: public microarray datasets (helge.tippmann@risoe.dk) Message-ID: <78979435@newdonner.Dartmouth.EDU> > Does anybody know where to get hand on microarray data > (prefereably in .celformat), especially for plant experiments? So > far we have only found sth. inSMD. It is for a non-profit > projects of some students.regards,Helge Try the Stanford Microarray database: http://genome-www5.stanford.edu/MicroArray/SMD/ -Sam From Curtis at CyberScientific.com Thu Jan 16 17:44:36 2003 From: Curtis at CyberScientific.com (Curtis Weigel) Date: Thu, 16 Jan 2003 14:44:36 -0800 Subject: [BiO BB] Inquiry into finding Bioinformatics Programmers. Message-ID: Posting: -Recruiter in search of .NET MS Visual Studio bioinformatics programmers- Does anyone know what genome companies are working strictly the .NET Platform? Regards, Curtis Weigel-Sr. Recruiter CyberCoders- Be Selective! 949.421.0217 (PDT) Curtis at CyberCoders.com Curtis at CyberScientific.com From frankv at it.uu.se Thu Jan 30 08:17:49 2003 From: frankv at it.uu.se (Frank D. Valencia) Date: Thu, 30 Jan 2003 14:17:49 +0100 Subject: [BiO BB] ACM PPDP'03 Call for Papers References: Message-ID: <3E3925FD.70609@it.uu.se> Dear all, Apologies for multiple copies of this message. Please circulate the following call for papers to colleagues. Best wishes, Frank D. Valencia. ------------------- Call for Papers Fifth ACM-SIGPLAN International Conference on Principles and Practice of Declarative Programming Uppsala, Sweden, 27-29 August 2003 IMPORTANT DATES Submission 29 March 2003 Notification 12 May 2003 Final Version 13 June 2003 WEB SITES PPDP 2003: http://www.it.uu.se/ppdp03/ PLI 2003: http://www.it.uu.se/pli03/ PPDP: http://pauillac.inria.fr/~fages/PPDP/. TOPICS (Not exhaustive): Logic and Constraint Programming; Functional Programming; Object-Oriented Programming; Concurrent Extensions; Mobile Computing; Integration of Paradigms; Proof Theoretic and Semantic Foundations; Program Design and Development; Type and Module Systems; Program Analysis and Verification; Program Transformation; Abstract Machines and Compilation; Programming Environments; and Application of Declarative Programming. CONFERENCE CHAIR: Konstantinos Sagonas, Uppsala University http://www.csd.uu.se/~kostis, email: kostis at it.uu.se PROGRAM CHAIR: Dale Miller, INRIA/Futurs & ?cole polytechnique http://www.lix.polytechnique.fr/Labo/Dale.Miller, email: Dale.Miller at inria.fr PROGRAM COMMITTEE Maria Alpuente, Univ. Polit?cnica de Valencia, ES Alessandra Di Pierro, Univ. of Pisa, IT Masami Hagiya, Univ. of Tokyo, JP Fergus Henderson, Univ. of Melbourne, AU Alberto Momigliano, Univ. of Leicester, UK Benjamin Pierce, Univ. of Pennsylvania, US C.R. Ramakrishnan, SUNY Stony Brook, US Mario Rodr?guez Artalejo, Univ. Complutense, ES Amr Sabry, Univ. of Indiana, US Konstantinos Sagonas, Uppsala University, SW Frank Valencia, Uppsala University, SW PREVIOUS PPDP CONFERENCES Paris (1999), Montreal (2000), Firenze (2001), Pittsburgh (2002). SCOPE OF THE CONFERENCE: PPDP 2003 aims to stimulate research in the use of logical formalisms and methods for analyzing, specifying, and performing computations. Of general interest are all aspects surrounding declarative programming paradigms such as logic programming, functional logic programming, and constraint programming. Topics of more specific interest are enhancements to such formalisms with mechanisms for concurrency, mobility, modularity, object-orientation, and static analysis, as well as the fuller exploitation of the programming-as-proof-search framework through new designs and improved implementation methods. At the level of methodology, the use of logic based principles in the design of tools for program development, analysis, and verification relative to all programming paradigms is of interest. Papers related to the use of declarative paradigms and tools in industry and education are especially solicited. This list is not exhaustive: submissions related to new and interesting ideas relating broadly to declarative programming are encouraged. Prospective authors are welcome to communicate with the Program Chair about the suitability of a specific topic. PAPER SUBMISSIONS: Submissions must be made on or before 29 March 2003, noon Central European Time and must be no more than 12 pages (including bibliography and appendices) and in standard ACM conference format: detailed formatting guidelines are available at http://www.acm.org/sigs/pubs/proceed/template.html, along with formatting templates or style files for LaTeX, Word Perfect, and Word. Proceedings will be published by ACM Press. Authors of accepted papers will be required to sign the ACM copyright form. Submissions will be carried out electronically via the Web via a link found at the conference web page. Papers must be submitted in either PDF format or as PostScript documents that are interpretable by Ghostscript. Papers must describe original, previously unpublished work that has not been simultaneously submitted for publication elsewhere. They must be written in English, must have a cover page with an abstract of up to 200 words, keywords, postal and electronic mailing addresses, and phone and fax numbers of the corresponding author. Authors who wish to provide additional material to the reviewers beyond the 12-page limit can do so in clearly marked appendices: reviewers are not required to read such appendices. Submissions that do not meet these guidelines may not be considered. CONFERENCE VENUE AND RELATED EVENTS: PPDP 2003 is part of a federation meeting known as Principles, Logics and Implementations of high-level programming languages (PLI 2003) which includes the ACM SIGPLAN International Conference on Functional Programming (ICFP 2003). PLI will run from 25 - 29 August 2003. The meetings will take place on the Uppsala University campus. AFFILIATED WORKSHOPS: Proposals are solicited for PLI 2003 affiliated workshops. Details about the submission of proposals are available from the PLI 2003 web site. The deadline for workshop proposals is 14 February 2003. STUDENT ATTENDEES: Students who have a paper accepted for the conference are offered student membership in SIGPLAN free for one year. As members of SIGPLAN they may apply for travel fellowships from the PAC fund. -- ========================================================================= Frank D. Valencia PostDoctoral Researcher in Computer Science Uppsala University, Sweden. office phone: +46 18 471 1030 mobile: +46 7358 20376 e-mai: frankv at it.uu.se http://user.it.uu.se/~frankv ========================================================================== From a.craig at imperial.ac.uk Thu Jan 30 12:07:02 2003 From: a.craig at imperial.ac.uk (a.craig) Date: Thu, 30 Jan 2003 17:07:02 -0000 Subject: [BiO BB] Affymetrix Data Message-ID: Dear List, Does anyone know of any publicly available code for extracting individual perfect match and mismatch intensities for each probe pair of an affymetrix chip. Best wishes, Andrew Craig -----Original Message----- From: bio_bulletin_board-request at bioinformatics.org [mailto:bio_bulletin_board-request at bioinformatics.org] Sent: Thursday, January 30, 2003 5:01 PM To: bio_bulletin_board at bioinformatics.org Subject: BiO_Bulletin_Board digest, Vol 1 #395 - 1 msg Send BiO_Bulletin_Board mailing list submissions to bio_bulletin_board at bioinformatics.org To subscribe or unsubscribe via the World Wide Web, visit https://bioinformatics.org/mailman/listinfo/bio_bulletin_board or, via email, send a message with subject or body 'help' to bio_bulletin_board-request at bioinformatics.org You can reach the person managing the list at bio_bulletin_board-admin at bioinformatics.org When replying, please edit your Subject line so it is more specific than "Re: Contents of BiO_Bulletin_Board digest..." Today's Topics: 1. ACM PPDP'03 Call for Papers (Frank D. Valencia) --__--__-- Message: 1 Date: Thu, 30 Jan 2003 14:17:49 +0100 From: "Frank D. Valencia" To: Corrado Priami Cc: mt at sfc.keio.ac.jp, luca at microsoft.com, miyano at ims.u-tokyo.ac.jp, lincoln at csl.sri.com, gdp at dcs.ed.ac.uk, ina.koch at molgen.mpg.de, mh at informatik.tu-cottbus.de, olaf.wolkenhauer at umist.ac.uk, Finn.Drablos at sintef.no, mroux at pasteur.fr, priami at science.unitn.it, degano at di.unipi.it, baldari at unisi.it, ladbury at biochem.ucl.ac.uk, aviv at wisdom.weizmann.ac.il, valencia at cnb.uam.es, vschachter at hybrigenics.fr, lin at informatik.uni-rostock.de, Charles.Auffray at vjf.cnrs.fr, Alexander.Bockmayr at loria.fr, simon.plyte at pharmacia.com, Francois.Fages at inria.fr, danos at logique.jussieu.fr, edu at apbionet.org, abi at apbionet.org, abnet at angis.org.au, board at open-bio.org, i3c-pathways at www.i3c.org, necluster-l at necluster.org, moby-l at biomoby.org, bio_bulletin_board at bioinformatics.org, biodevelopers at bioinformatics.org, bioclusters at bioinformatics.org, announcements at vanbug.org, bioinf at vei.co.uk, 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cofi-reactive at brics.dk, comm-theory at ieee.org, concurrency at cwi.nl, conf at colmar.uha.fr, confs-conferencesa at comsoc.org, coq at margaux.inria, coq-club at pauillac.inria.fr, cs-logic at cs.indiana.edu, csl at dbai.tuwien.ac.at, csp at carlit.toulouse.inra.fr, dataloger at cs.chalmers.se, eacsl at dimi.uniud.it, frdist-obj at distributedcoalition.org, eapls-request at mailbase.ac.uk, eatcs-it-l at unifi.it, eatcs-it at cs.unibo.it, ecoop-info at ecoop.org, facs at lboro.ac.uk, eapls at jiscmail.ac.uk, ercim at cnuce.cnr.it, behavior at cs.ucsd.edu, formal-methods at cs.uidaho.edu, fsdm at it.uq.edu.au, ifip-tc6 at informatik.rwth-aachen.de, info-confs at comsoc.org, a_kapela at heart.med.upatras.gr, hise-safety-critical at minster.cs.york.ac.uk, ifmsig at cs.tcd.ie, info-hol at ultimate.cs.byu.edu, isabelle-users at cl.cam.ac.uk, jml at cs.iastate.edu, lambda-usergroup at dcs.ed.ac.uk, lfcs-interest at dcs.ed.ac.uk, itc at comsoc.org, logic at theory.lcs.mit.edu, news-announce-conferences at uunet.uu.net, softverf at nist.gov, lics at research.bell-labs.com, logic-announce at uclink4.berkeley.edu, logic-ml at logic.jaist.ac.jp, logic at cs.cornell.edu, lotos-world at sanson.dit.upm.es, nqthm-users at cli.com, nuprllist at cs.cornell.edu, nvti-list at cwi.nl, nwpt-info at sool.ioc.ee, om-announce at lars.math.fsu.edu, papm at dcs.ed.ac.uk, performance at haven.epm.ornl.gov, PetriNets at daimi.aau.dk, prog-lang at daimi.aau.dk, prog-lang at diku.dk, pvs at csl.sri.com, qed at mcs.anl.gov, reliable_computing at interval.usl.edu, rewriting at ens-lyon.fr, seworld at cs.colorado.edu, stochver at cs.bham.ac.uk, system-safety at listserv.gsfc.nasa.gov, theorem-provers at ai.mit.edu, theory-a at vm1.nodak.edu, theorynt at listserv.nodak.edu, vdm-forum at jiscmail.ac.uk, zeves at ora.on.ca, zforum at prg.ox.ac.uk, Bart.Jacobs at cs.kun.nl, comp-all at comp.lancs.ac.uk, traverso at itc.it, luca.degioia at unimib.it, milanesi at itba.mi.cnr.it, paolo at dsi.unifi.it, furlan at itc.it, laura.bonati at unimib.it, webmaster at systemsbiology.org, Lchalif at bioinformatics.weizmann.ac.il, Info at isb-sib.ch, Roslin.Bioinformatics at bbsrc.ac.uk, robin_deacle at ncbiotech.org, cubic at maple.bioc.columbia.edu, staff at sbc.su.se, drg at brc.dcs.gla.ac.uk, support at ebi.ac.uk, admin at mail.cryst.bbk.ac.uk, Queries at bioinf.man.ac.uk, director at bioinfo.ernet.in, winhide at sanbi.ac.za, info at sanbi.ac.za, brutlag at stanford.edu, kanehisa at kuicr.kyoto-u.ac.jp, goto at kuicr.kyoto-u.ac.jp, nakaya at kuicr.kyoto-u.ac.jp, shuichi at kuicr.kyoto-u.ac.jp, kaede at kuicr.kyoto-u.ac.jp, yuko at scl.kyoto-u.ac.jp, chiaki at scl.kyoto-u.ac.jp, asako at scl.kyoto-u.ac.jp, okuno at kuicr.kyoto-u.ac.jp, adeline at kuicr.kyoto-u.ac.jp, hirakawa at kuicr.kyoto-u.ac.jp, park at kuicr.kyoto-u.ac.jp, hattori at kuicr.kyoto-u.ac.jp, igarashi at kuicr.kyoto-u.ac.jp, katayama at kuicr.kyoto-u.ac.jp, acyshzw at kuicr.kyoto-u.ac.jp, kot at kuicr.kyoto-u.ac.jp, minowa at kuicr.kyoto-u.ac.jp, itoh at kuicr.kyoto-u.ac.jp, hizukuri at kuicr.kyoto-u.ac.jp, yoshi at kuicr.kyoto-u.ac.jp, takuji at kuicr.kyoto-u.ac.jp, okuda at kuicr.kyoto-u.ac.jp, rikuhiro at kuicr.kyoto-u.ac.jp, moriya at kuicr.kyoto-u.ac.jp, fujita at kuicr.kyoto-u.ac.jp, sato at kuicr.kyoto-u.ac.jp, naobumi at kuicr.kyoto-u.ac.jp, mtanaka at kuicr.kyoto-u.ac.jp, nati at kuicr.kyoto-u.ac.jp, toshi at scl.kyoto-u.ac.jp, tomomi at scl.kyoto-u.ac.jp, sanae at scl.kyoto-u.ac.jp, kayo at scl.kyoto-u.ac.jp, tomoko at scl.kyoto-u.ac.jp, nobue at scl.kyoto-u.ac.jp, megumi at scl.kyoto-u.ac.jp, rumiko at scl.kyoto-u.ac.jp, atsuko at scl.kyoto-u.ac.jp, junko at scl.kyoto-u.ac.jp, yuriko at scl.kyoto-u.ac.jp, yumi at scl.kyoto-u.ac.jp, njunko at scl.kyoto-u.ac.jp, miho at scl.kyoto-u.ac.jp, ktomoko at scl.kyoto-u.ac.jp, kana at scl.kyoto-u.ac.jp, fukumoto at scl.kyoto-u.ac.jp, kanae at scl.kyoto-u.ac.jp, kshirais at scl.kyoto-u.ac.jp, nishikaw at scl.kyoto-u.ac.jp, ohkubo at scl.kyoto-u.ac.jp, uehara at scl.kyoto-u.ac.jp, tonomura at scl.kyoto-u.ac.jp, furuta at scl.kyoto-u.ac.jp, konya at scl.kyoto-u.ac.jp, yamazaki at scl.kyoto-u.ac.jp, bioinformatics at ireland.com, rserra at oramont.it, axa at cs.purdue.edu, casadio at kaiser.alma.unibo.it, Heiko.Mueller at eu.pnu.com, Valencia at cnb.vam.es, Farisel at kaiser.alma.unibo.it, gigi at lipid.biocomp.unibo.it, soda at dsi.unifi.it, vullo at dsi.unifi.it, alex at mcculloch.ing.unifi.it, h-wilson at tamu.edu, jherreo at cnio.es, aadil_raiyan at usa.net, ponarul at usa.net, rajnishgupta73 at radiffmail.com, ewi at gbf.de, abi at gbf.de, kse at gbf.de, hom at gbf.de, ili at gbf.de, tcr at gbf.de, mch at gbf.de, ksl at gbf.de, vdr at gbf.de, dtj at cs.ucl.ac.uk, lmiller at cs.iastate.edu, lhb at iastate.edu, xgai at iastate.edu, melon at iq.usp.br, info at bioinformatics.buffalo.edu, info at ki.se, sdavids at uwc.ac.za, steipe at lmb.uni-muenchen.de, twclark at cs.uchicago.edu, ncox at genetics.bsd.uchicago.edu, s-endy at uchicago.edu, efrank at hep.uchicago.edu, dhl at genetics.bsd.uchicago.edu, rquigg at medicine.bsd.uchicago.edu, ridg at cs.uchicago.edu Subject: [BiO BB] ACM PPDP'03 Call for Papers Reply-To: bio_bulletin_board at bioinformatics.org Dear all, Apologies for multiple copies of this message. Please circulate the following call for papers to colleagues. Best wishes, Frank D. Valencia. ------------------- Call for Papers Fifth ACM-SIGPLAN International Conference on Principles and Practice of Declarative Programming Uppsala, Sweden, 27-29 August 2003 IMPORTANT DATES Submission 29 March 2003 Notification 12 May 2003 Final Version 13 June 2003 WEB SITES PPDP 2003: http://www.it.uu.se/ppdp03/ PLI 2003: http://www.it.uu.se/pli03/ PPDP: http://pauillac.inria.fr/~fages/PPDP/. TOPICS (Not exhaustive): Logic and Constraint Programming; Functional Programming; Object-Oriented Programming; Concurrent Extensions; Mobile Computing; Integration of Paradigms; Proof Theoretic and Semantic Foundations; Program Design and Development; Type and Module Systems; Program Analysis and Verification; Program Transformation; Abstract Machines and Compilation; Programming Environments; and Application of Declarative Programming. CONFERENCE CHAIR: Konstantinos Sagonas, Uppsala University http://www.csd.uu.se/~kostis, email: kostis at it.uu.se PROGRAM CHAIR: Dale Miller, INRIA/Futurs & Ecole polytechnique http://www.lix.polytechnique.fr/Labo/Dale.Miller, email: Dale.Miller at inria.fr PROGRAM COMMITTEE Maria Alpuente, Univ. Politecnica de Valencia, ES Alessandra Di Pierro, Univ. of Pisa, IT Masami Hagiya, Univ. of Tokyo, JP Fergus Henderson, Univ. of Melbourne, AU Alberto Momigliano, Univ. of Leicester, UK Benjamin Pierce, Univ. of Pennsylvania, US C.R. Ramakrishnan, SUNY Stony Brook, US Mario Rodriguez Artalejo, Univ. Complutense, ES Amr Sabry, Univ. of Indiana, US Konstantinos Sagonas, Uppsala University, SW Frank Valencia, Uppsala University, SW PREVIOUS PPDP CONFERENCES Paris (1999), Montreal (2000), Firenze (2001), Pittsburgh (2002). SCOPE OF THE CONFERENCE: PPDP 2003 aims to stimulate research in the use of logical formalisms and methods for analyzing, specifying, and performing computations. Of general interest are all aspects surrounding declarative programming paradigms such as logic programming, functional logic programming, and constraint programming. Topics of more specific interest are enhancements to such formalisms with mechanisms for concurrency, mobility, modularity, object-orientation, and static analysis, as well as the fuller exploitation of the programming-as-proof-search framework through new designs and improved implementation methods. At the level of methodology, the use of logic based principles in the design of tools for program development, analysis, and verification relative to all programming paradigms is of interest. Papers related to the use of declarative paradigms and tools in industry and education are especially solicited. This list is not exhaustive: submissions related to new and interesting ideas relating broadly to declarative programming are encouraged. Prospective authors are welcome to communicate with the Program Chair about the suitability of a specific topic. PAPER SUBMISSIONS: Submissions must be made on or before 29 March 2003, noon Central European Time and must be no more than 12 pages (including bibliography and appendices) and in standard ACM conference format: detailed formatting guidelines are available at http://www.acm.org/sigs/pubs/proceed/template.html, along with formatting templates or style files for LaTeX, Word Perfect, and Word. Proceedings will be published by ACM Press. Authors of accepted papers will be required to sign the ACM copyright form. Submissions will be carried out electronically via the Web via a link found at the conference web page. Papers must be submitted in either PDF format or as PostScript documents that are interpretable by Ghostscript. Papers must describe original, previously unpublished work that has not been simultaneously submitted for publication elsewhere. They must be written in English, must have a cover page with an abstract of up to 200 words, keywords, postal and electronic mailing addresses, and phone and fax numbers of the corresponding author. Authors who wish to provide additional material to the reviewers beyond the 12-page limit can do so in clearly marked appendices: reviewers are not required to read such appendices. Submissions that do not meet these guidelines may not be considered. CONFERENCE VENUE AND RELATED EVENTS: PPDP 2003 is part of a federation meeting known as Principles, Logics and Implementations of high-level programming languages (PLI 2003) which includes the ACM SIGPLAN International Conference on Functional Programming (ICFP 2003). PLI will run from 25 - 29 August 2003. The meetings will take place on the Uppsala University campus. AFFILIATED WORKSHOPS: Proposals are solicited for PLI 2003 affiliated workshops. Details about the submission of proposals are available from the PLI 2003 web site. The deadline for workshop proposals is 14 February 2003. STUDENT ATTENDEES: Students who have a paper accepted for the conference are offered student membership in SIGPLAN free for one year. As members of SIGPLAN they may apply for travel fellowships from the PAC fund. -- ========================================================================= Frank D. Valencia PostDoctoral Researcher in Computer Science Uppsala University, Sweden. office phone: +46 18 471 1030 mobile: +46 7358 20376 e-mai: frankv at it.uu.se http://user.it.uu.se/~frankv ========================================================================== --__--__-- _______________________________________________ BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org https://bioinformatics.org/mailman/listinfo/bio_bulletin_board End of BiO_Bulletin_Board Digest From cmdobson at ucalgary.ca Thu Jan 30 16:49:28 2003 From: cmdobson at ucalgary.ca (Melissa Dobson) Date: Thu, 30 Jan 2003 14:49:28 -0700 Subject: [BiO BB] Hello Message-ID: <3E399DE8.8D901AA6@ucalgary.ca> I am looking for a database which allows for the identification of polymorphic markers between different strains of mice. hat could make possible to differenciate rapidly between three strains. We need to check the status of a specific chromosomal region after a large number of backcross of the original KO mouse, through two inbred strains, sequencially. Many thanks C. M. Dobson From rgwoodley at sprynet.com Thu Jan 30 21:24:31 2003 From: rgwoodley at sprynet.com (Rohan Woodley) Date: Thu, 30 Jan 2003 21:24:31 -0500 Subject: [BiO BB] Affymetrix Data References: Message-ID: <3E39DE5F.8040308@sprynet.com> A.Craig, If I am understanding your questions correctly, I think you would need the Chip Library file and the data file. If that is the case, I have written a program the does the cross referencing that can be modified to suit your needs. For my particular need, I did not look for perfect match intensities, however I am sure the program can be extended to take it into consideration. Let me know Rohan. a.craig wrote: >Dear List, > >Does anyone know of any publicly available code for extracting individual >perfect match and mismatch intensities for each probe pair of an affymetrix >chip. > >Best wishes, > >Andrew Craig > >-----Original Message----- >From: bio_bulletin_board-request at bioinformatics.org >[mailto:bio_bulletin_board-request at bioinformatics.org] >Sent: Thursday, January 30, 2003 5:01 PM >To: bio_bulletin_board at bioinformatics.org >Subject: BiO_Bulletin_Board digest, Vol 1 #395 - 1 msg > > >Send BiO_Bulletin_Board mailing list submissions to > bio_bulletin_board at bioinformatics.org > >To subscribe or unsubscribe via the World Wide Web, visit > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board >or, via email, send a message with subject or body 'help' to > bio_bulletin_board-request at bioinformatics.org > >You can reach the person managing the list at > bio_bulletin_board-admin at bioinformatics.org > >When replying, please edit your Subject line so it is more specific >than "Re: Contents of BiO_Bulletin_Board digest..." > > >Today's Topics: > > 1. ACM PPDP'03 Call for Papers (Frank D. Valencia) > >--__--__-- > >Message: 1 >Date: Thu, 30 Jan 2003 14:17:49 +0100 >From: "Frank D. Valencia" >To: Corrado Priami >Cc: mt at sfc.keio.ac.jp, luca at microsoft.com, miyano at ims.u-tokyo.ac.jp, > lincoln at csl.sri.com, gdp at dcs.ed.ac.uk, ina.koch at molgen.mpg.de, > mh at informatik.tu-cottbus.de, olaf.wolkenhauer at umist.ac.uk, > Finn.Drablos at sintef.no, mroux at pasteur.fr, priami at science.unitn.it, > degano at di.unipi.it, baldari at unisi.it, ladbury at biochem.ucl.ac.uk, > aviv at wisdom.weizmann.ac.il, valencia at cnb.uam.es, > vschachter at hybrigenics.fr, lin at informatik.uni-rostock.de, > Charles.Auffray at vjf.cnrs.fr, Alexander.Bockmayr at loria.fr, > simon.plyte at pharmacia.com, Francois.Fages at inria.fr, > danos at logique.jussieu.fr, edu at apbionet.org, abi at apbionet.org, > abnet at angis.org.au, board at open-bio.org, i3c-pathways at www.i3c.org, > necluster-l at necluster.org, moby-l at biomoby.org, > bio_bulletin_board at bioinformatics.org, > biodevelopers at bioinformatics.org, bioclusters at bioinformatics.org, > announcements at vanbug.org, bioinf at vei.co.uk, > bioinformatics at cs.uchicago.edu, announce at apbionet.org, > discuss at apbionet.org, tchu at andrew.cmu.edu, gfc at cbmi.upmc.edu, > cg09+ at andrew.cmu.edu, ddanks at ai.uwf.edu, dhandley at andrew.cmu.edu, > mani at cbmi.upmc.edu, ODohertyR at msx.dept-med.pitt.edu, dgp+ at pitt.edu, > jdramsey at andrew.cmu.edu, rsaavedra at ai.uwf.edu, > rscheines at andrew.cmu.edu, nserban at andrew.cmu.edu, rbas at cs.cmu.edu, > ps7z at andrew.cmu.edu, larry at stat.cmu.edu, wimberly3 at earthlink.net, > cwyoo at cbmi.upmc.edu, jc12b at nih.gov, lauderdk at nigms.nih.gov, > dg13w at nih.gov, pm4o at nih.gov, postowe at csr.nih.gov, >katzf at mail.nih.gov, > m8p at nih.gov, mm539c at nih.gov, ellenliberman at nih.gov, > goodp at mail.nih.gov, brooksl at exchange.nih.gov, twerym at nhlbi.nih.gov, > df18s at nih.gov, me25t at nih.gov, rm69e at nih.gov, ck82j at nih.gov, > swajar at nibib.nih.gov, sourwine at nibib.nih.gov, fhaseltine at aol.com, > ks79x at nih.gov, Barry_Davis at nih.gov, ek17w at nih.gov, > hydej at extra.niddk.nih.gov, ws22e at nih.gov, mh38f at nih.gov, > y15o at nih.gov, hs38k at nih.gov, mc105x at nih.gov, ivaisman at gmu.edu, > cjamison at gmu.edu, sjafri at gmu.edu, Jan.Verwer at cwi.nl, > lilia.alberghina at unimib.it, dan at biomed.bm.technion.ac.il, > hw at bio.vu.nl, brazma at ebi.ac.uk, Bo.Servenius at astrazeneca.com, > inge at ii.uib.no, bpn at mbb.ki.se, johnson at abo.fi, tmargus at ebc.ee, > nikob at cbs.dtu.dk, ukkonen at cs.helsinki.fi, vissing at exiqon.com, > daniel at decode.is, peleg at smi.stanford.edu, yeh at smi.stanford.edu, > apo at gbf.de, acl2 at cs.utexas.edu, H.Schmidt at DKFZ-Heidelberg.de, > agents at cs.umbc.edu, aiia at di.unito.it, alg at comm.toronto.edu, > amast at cs.utwente.nl, announce at tcos.org, andrea.massa at ing.unitn.it, > alessandro.bogliolo at uniurb.it, announcements.chi at acm.com, > appiar at ncc.up.pt, atp at logic.tuwien.ac.at, asci at twi.tudelft.nl, > bra-types at cs.chalmers.se, categories at mta.ca, ccl at dfki.uni-sb.de, > clp at iscs.nus.edu.sg, cofi-reactive at brics.dk, comm-theory at ieee.org, > concurrency at cwi.nl, conf at colmar.uha.fr, > confs-conferencesa at comsoc.org, coq at margaux.inria, > coq-club at pauillac.inria.fr, cs-logic at cs.indiana.edu, > csl at dbai.tuwien.ac.at, csp at carlit.toulouse.inra.fr, > dataloger at cs.chalmers.se, eacsl at dimi.uniud.it, > frdist-obj at distributedcoalition.org, eapls-request at mailbase.ac.uk, > eatcs-it-l at unifi.it, eatcs-it at cs.unibo.it, ecoop-info at ecoop.org, > facs at lboro.ac.uk, eapls at jiscmail.ac.uk, ercim at cnuce.cnr.it, > behavior at cs.ucsd.edu, formal-methods at cs.uidaho.edu, > fsdm at it.uq.edu.au, ifip-tc6 at informatik.rwth-aachen.de, > info-confs at comsoc.org, a_kapela at heart.med.upatras.gr, > hise-safety-critical at minster.cs.york.ac.uk, ifmsig at cs.tcd.ie, > info-hol at ultimate.cs.byu.edu, isabelle-users at cl.cam.ac.uk, > jml at cs.iastate.edu, lambda-usergroup at dcs.ed.ac.uk, > lfcs-interest at dcs.ed.ac.uk, itc at comsoc.org, >logic at theory.lcs.mit.edu, > news-announce-conferences at uunet.uu.net, softverf at nist.gov, > lics at research.bell-labs.com, logic-announce at uclink4.berkeley.edu, > logic-ml at logic.jaist.ac.jp, logic at cs.cornell.edu, > lotos-world at sanson.dit.upm.es, nqthm-users at cli.com, > nuprllist at cs.cornell.edu, nvti-list at cwi.nl, nwpt-info at sool.ioc.ee, > om-announce at lars.math.fsu.edu, papm at dcs.ed.ac.uk, > performance at haven.epm.ornl.gov, PetriNets at daimi.aau.dk, > prog-lang at daimi.aau.dk, prog-lang at diku.dk, pvs at csl.sri.com, > qed at mcs.anl.gov, reliable_computing at interval.usl.edu, > rewriting at ens-lyon.fr, seworld at cs.colorado.edu, > stochver at cs.bham.ac.uk, system-safety at listserv.gsfc.nasa.gov, > theorem-provers at ai.mit.edu, theory-a at vm1.nodak.edu, > theorynt at listserv.nodak.edu, vdm-forum at jiscmail.ac.uk, > zeves at ora.on.ca, zforum at prg.ox.ac.uk, Bart.Jacobs at cs.kun.nl, > comp-all at comp.lancs.ac.uk, traverso at itc.it, luca.degioia at unimib.it, > milanesi at itba.mi.cnr.it, paolo at dsi.unifi.it, furlan at itc.it, > laura.bonati at unimib.it, webmaster at systemsbiology.org, > Lchalif at bioinformatics.weizmann.ac.il, Info at isb-sib.ch, > Roslin.Bioinformatics at bbsrc.ac.uk, robin_deacle at ncbiotech.org, > cubic at maple.bioc.columbia.edu, staff at sbc.su.se, > drg at brc.dcs.gla.ac.uk, support at ebi.ac.uk, >admin at mail.cryst.bbk.ac.uk, > Queries at bioinf.man.ac.uk, director at bioinfo.ernet.in, > winhide at sanbi.ac.za, info at sanbi.ac.za, brutlag at stanford.edu, > kanehisa at kuicr.kyoto-u.ac.jp, goto at kuicr.kyoto-u.ac.jp, > nakaya at kuicr.kyoto-u.ac.jp, shuichi at kuicr.kyoto-u.ac.jp, > kaede at kuicr.kyoto-u.ac.jp, yuko at scl.kyoto-u.ac.jp, > chiaki at scl.kyoto-u.ac.jp, asako at scl.kyoto-u.ac.jp, > okuno at kuicr.kyoto-u.ac.jp, adeline at kuicr.kyoto-u.ac.jp, > hirakawa at kuicr.kyoto-u.ac.jp, park at kuicr.kyoto-u.ac.jp, > hattori at kuicr.kyoto-u.ac.jp, igarashi at kuicr.kyoto-u.ac.jp, > katayama at kuicr.kyoto-u.ac.jp, acyshzw at kuicr.kyoto-u.ac.jp, > kot at kuicr.kyoto-u.ac.jp, minowa at kuicr.kyoto-u.ac.jp, > itoh at kuicr.kyoto-u.ac.jp, hizukuri at kuicr.kyoto-u.ac.jp, > yoshi at kuicr.kyoto-u.ac.jp, takuji at kuicr.kyoto-u.ac.jp, > okuda at kuicr.kyoto-u.ac.jp, rikuhiro at kuicr.kyoto-u.ac.jp, > moriya at kuicr.kyoto-u.ac.jp, fujita at kuicr.kyoto-u.ac.jp, > sato at kuicr.kyoto-u.ac.jp, naobumi at kuicr.kyoto-u.ac.jp, > mtanaka at kuicr.kyoto-u.ac.jp, nati at kuicr.kyoto-u.ac.jp, > toshi at scl.kyoto-u.ac.jp, tomomi at scl.kyoto-u.ac.jp, > sanae at scl.kyoto-u.ac.jp, kayo at scl.kyoto-u.ac.jp, > tomoko at scl.kyoto-u.ac.jp, nobue at scl.kyoto-u.ac.jp, > megumi at scl.kyoto-u.ac.jp, rumiko at scl.kyoto-u.ac.jp, > atsuko at scl.kyoto-u.ac.jp, junko at scl.kyoto-u.ac.jp, > yuriko at scl.kyoto-u.ac.jp, yumi at scl.kyoto-u.ac.jp, > njunko at scl.kyoto-u.ac.jp, miho at scl.kyoto-u.ac.jp, > ktomoko at scl.kyoto-u.ac.jp, kana at scl.kyoto-u.ac.jp, > fukumoto at scl.kyoto-u.ac.jp, kanae at scl.kyoto-u.ac.jp, > kshirais at scl.kyoto-u.ac.jp, nishikaw at scl.kyoto-u.ac.jp, > ohkubo at scl.kyoto-u.ac.jp, uehara at scl.kyoto-u.ac.jp, > tonomura at scl.kyoto-u.ac.jp, furuta at scl.kyoto-u.ac.jp, > konya at scl.kyoto-u.ac.jp, yamazaki at scl.kyoto-u.ac.jp, > bioinformatics at ireland.com, rserra at oramont.it, axa at cs.purdue.edu, > casadio at kaiser.alma.unibo.it, Heiko.Mueller at eu.pnu.com, > Valencia at cnb.vam.es, Farisel at kaiser.alma.unibo.it, > gigi at lipid.biocomp.unibo.it, soda at dsi.unifi.it, vullo at dsi.unifi.it, > alex at mcculloch.ing.unifi.it, h-wilson at tamu.edu, jherreo at cnio.es, > aadil_raiyan at usa.net, ponarul at usa.net, >rajnishgupta73 at radiffmail.com, > ewi at gbf.de, abi at gbf.de, kse at gbf.de, hom at gbf.de, ili at gbf.de, > tcr at gbf.de, mch at gbf.de, ksl at gbf.de, vdr at gbf.de, dtj at cs.ucl.ac.uk, > lmiller at cs.iastate.edu, lhb at iastate.edu, xgai at iastate.edu, > melon at iq.usp.br, info at bioinformatics.buffalo.edu, info at ki.se, > sdavids at uwc.ac.za, steipe at lmb.uni-muenchen.de, > twclark at cs.uchicago.edu, ncox at genetics.bsd.uchicago.edu, > s-endy at uchicago.edu, efrank at hep.uchicago.edu, > dhl at genetics.bsd.uchicago.edu, rquigg at medicine.bsd.uchicago.edu, > ridg at cs.uchicago.edu >Subject: [BiO BB] ACM PPDP'03 Call for Papers >Reply-To: bio_bulletin_board at bioinformatics.org > > >Dear all, > >Apologies for multiple copies of this message. Please circulate the >following call for papers to colleagues. > >Best wishes, > Frank D. Valencia. > >------------------- > Call for Papers > Fifth ACM-SIGPLAN International Conference on > Principles and Practice of Declarative Programming > Uppsala, Sweden, 27-29 August 2003 > >IMPORTANT DATES > Submission 29 March 2003 > Notification 12 May 2003 > Final Version 13 June 2003 > >WEB SITES > PPDP 2003: http://www.it.uu.se/ppdp03/ > PLI 2003: http://www.it.uu.se/pli03/ > PPDP: http://pauillac.inria.fr/~fages/PPDP/. > >TOPICS (Not exhaustive): Logic and Constraint Programming; Functional > Programming; Object-Oriented Programming; Concurrent Extensions; > Mobile Computing; Integration of Paradigms; Proof Theoretic and > Semantic Foundations; Program Design and Development; Type and Module > Systems; Program Analysis and Verification; Program Transformation; > Abstract Machines and Compilation; Programming Environments; and > Application of Declarative Programming. > >CONFERENCE CHAIR: Konstantinos Sagonas, Uppsala University > http://www.csd.uu.se/~kostis, email: kostis at it.uu.se > >PROGRAM CHAIR: Dale Miller, INRIA/Futurs & Ecole polytechnique > http://www.lix.polytechnique.fr/Labo/Dale.Miller, > email: Dale.Miller at inria.fr > >PROGRAM COMMITTEE > Maria Alpuente, Univ. Politecnica de Valencia, ES > Alessandra Di Pierro, Univ. of Pisa, IT > Masami Hagiya, Univ. of Tokyo, JP > Fergus Henderson, Univ. of Melbourne, AU > Alberto Momigliano, Univ. of Leicester, UK > Benjamin Pierce, Univ. of Pennsylvania, US > C.R. Ramakrishnan, SUNY Stony Brook, US > Mario Rodriguez Artalejo, Univ. Complutense, ES > Amr Sabry, Univ. of Indiana, US > Konstantinos Sagonas, Uppsala University, SW > Frank Valencia, Uppsala University, SW > >PREVIOUS PPDP CONFERENCES > Paris (1999), Montreal (2000), Firenze (2001), Pittsburgh (2002). > >SCOPE OF THE CONFERENCE: PPDP 2003 aims to stimulate research in the >use of logical formalisms and methods for analyzing, specifying, and >performing computations. Of general interest are all aspects >surrounding declarative programming paradigms such as logic >programming, functional logic programming, and constraint programming. >Topics of more specific interest are enhancements to such formalisms >with mechanisms for concurrency, mobility, modularity, >object-orientation, and static analysis, as well as the fuller >exploitation of the programming-as-proof-search framework through new >designs and improved implementation methods. At the level of >methodology, the use of logic based principles in the design of tools >for program development, analysis, and verification relative to all >programming paradigms is of interest. Papers related to the use of >declarative paradigms and tools in industry and education are >especially solicited. This list is not exhaustive: submissions >related to new and interesting ideas relating broadly to declarative >programming are encouraged. Prospective authors are welcome to >communicate with the Program Chair about the suitability of a specific >topic. > >PAPER SUBMISSIONS: Submissions must be made on or before 29 March >2003, noon Central European Time and must be no more than 12 pages >(including bibliography and appendices) and in standard ACM conference >format: detailed formatting guidelines are available at >http://www.acm.org/sigs/pubs/proceed/template.html, along with >formatting templates or style files for LaTeX, Word Perfect, and Word. >Proceedings will be published by ACM Press. Authors of accepted >papers will be required to sign the ACM copyright form. Submissions >will be carried out electronically via the Web via a link found at the >conference web page. Papers must be submitted in either PDF format or >as PostScript documents that are interpretable by Ghostscript. Papers >must describe original, previously unpublished work that has not been >simultaneously submitted for publication elsewhere. They must be >written in English, must have a cover page with an abstract of up to >200 words, keywords, postal and electronic mailing addresses, and >phone and fax numbers of the corresponding author. Authors who wish >to provide additional material to the reviewers beyond the 12-page >limit can do so in clearly marked appendices: reviewers are not >required to read such appendices. Submissions that do not meet these >guidelines may not be considered. > >CONFERENCE VENUE AND RELATED EVENTS: PPDP 2003 is part of a federation >meeting known as Principles, Logics and Implementations of high-level >programming languages (PLI 2003) which includes the ACM SIGPLAN >International Conference on Functional Programming (ICFP 2003). PLI >will run from 25 - 29 August 2003. The meetings will take place on >the Uppsala University campus. > >AFFILIATED WORKSHOPS: Proposals are solicited for PLI 2003 affiliated >workshops. Details about the submission of proposals are available >from the PLI 2003 web site. The deadline for workshop proposals is 14 >February 2003. > >STUDENT ATTENDEES: Students who have a paper accepted for the >conference are offered student membership in SIGPLAN free for one >year. As members of SIGPLAN they may apply for travel fellowships >from the PAC fund. > > > > > > From rossini at blindglobe.net Thu Jan 30 12:30:43 2003 From: rossini at blindglobe.net (A.J. Rossini) Date: Thu, 30 Jan 2003 09:30:43 -0800 Subject: [BiO BB] Affymetrix Data In-Reply-To: ("a.craig"'s message of "Thu, 30 Jan 2003 17:07:02 -0000") References: Message-ID: <87r8aufsu4.fsf@jeeves.blindglobe.net> Look at the BioConductor suite, which does that (and lets you "redesign" probe <-> gene mappings, should you wish), as well as having a range of normalization algorithms... http://www.bioconductor.org/ >>>>> "ac" == a craig writes: ac> Dear List, ac> Does anyone know of any publicly available code for extracting individual ac> perfect match and mismatch intensities for each probe pair of an affymetrix ac> chip. ac> Best wishes, ac> Andrew Craig ac> -----Original Message----- ac> From: bio_bulletin_board-request at bioinformatics.org ac> [mailto:bio_bulletin_board-request at bioinformatics.org] ac> Sent: Thursday, January 30, 2003 5:01 PM ac> To: bio_bulletin_board at bioinformatics.org ac> Subject: BiO_Bulletin_Board digest, Vol 1 #395 - 1 msg ac> Send BiO_Bulletin_Board mailing list submissions to ac> bio_bulletin_board at bioinformatics.org ac> To subscribe or unsubscribe via the World Wide Web, visit ac> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board ac> or, via email, send a message with subject or body 'help' to ac> bio_bulletin_board-request at bioinformatics.org ac> You can reach the person managing the list at ac> bio_bulletin_board-admin at bioinformatics.org ac> When replying, please edit your Subject line so it is more specific ac> than "Re: Contents of BiO_Bulletin_Board digest..." ac> Today's Topics: ac> 1. ACM PPDP'03 Call for Papers (Frank D. Valencia) ac> --__--__-- ac> Message: 1 ac> Date: Thu, 30 Jan 2003 14:17:49 +0100 ac> From: "Frank D. Valencia" ac> To: Corrado Priami ac> Cc: mt at sfc.keio.ac.jp, luca at microsoft.com, miyano at ims.u-tokyo.ac.jp, ac> lincoln at csl.sri.com, gdp at dcs.ed.ac.uk, ina.koch at molgen.mpg.de, ac> mh at informatik.tu-cottbus.de, olaf.wolkenhauer at umist.ac.uk, ac> Finn.Drablos at sintef.no, mroux at pasteur.fr, priami at science.unitn.it, ac> degano at di.unipi.it, baldari at unisi.it, ladbury at biochem.ucl.ac.uk, ac> aviv at wisdom.weizmann.ac.il, valencia at cnb.uam.es, ac> vschachter at hybrigenics.fr, lin at informatik.uni-rostock.de, ac> Charles.Auffray at vjf.cnrs.fr, Alexander.Bockmayr at loria.fr, ac> simon.plyte at pharmacia.com, Francois.Fages at inria.fr, ac> danos at logique.jussieu.fr, edu at apbionet.org, abi at apbionet.org, ac> abnet at angis.org.au, board at open-bio.org, i3c-pathways at www.i3c.org, ac> necluster-l at necluster.org, moby-l at biomoby.org, ac> bio_bulletin_board at bioinformatics.org, ac> biodevelopers at bioinformatics.org, bioclusters at bioinformatics.org, ac> announcements at vanbug.org, bioinf at vei.co.uk, ac> bioinformatics at cs.uchicago.edu, announce at apbionet.org, ac> discuss at apbionet.org, tchu at andrew.cmu.edu, gfc at cbmi.upmc.edu, ac> cg09+ at andrew.cmu.edu, ddanks at ai.uwf.edu, dhandley at andrew.cmu.edu, ac> mani at cbmi.upmc.edu, ODohertyR at msx.dept-med.pitt.edu, dgp+ at pitt.edu, ac> jdramsey at andrew.cmu.edu, rsaavedra at ai.uwf.edu, ac> rscheines at andrew.cmu.edu, nserban at andrew.cmu.edu, rbas at cs.cmu.edu, ac> ps7z at andrew.cmu.edu, larry at stat.cmu.edu, wimberly3 at earthlink.net, ac> cwyoo at cbmi.upmc.edu, jc12b at nih.gov, lauderdk at nigms.nih.gov, ac> dg13w at nih.gov, pm4o at nih.gov, postowe at csr.nih.gov, ac> katzf at mail.nih.gov, ac> m8p at nih.gov, mm539c at nih.gov, ellenliberman at nih.gov, ac> goodp at mail.nih.gov, brooksl at exchange.nih.gov, twerym at nhlbi.nih.gov, ac> df18s at nih.gov, me25t at nih.gov, rm69e at nih.gov, ck82j at nih.gov, ac> swajar at nibib.nih.gov, sourwine at nibib.nih.gov, fhaseltine at aol.com, ac> ks79x at nih.gov, Barry_Davis at nih.gov, ek17w at nih.gov, ac> hydej at extra.niddk.nih.gov, ws22e at nih.gov, mh38f at nih.gov, ac> y15o at nih.gov, hs38k at nih.gov, mc105x at nih.gov, ivaisman at gmu.edu, ac> cjamison at gmu.edu, sjafri at gmu.edu, Jan.Verwer at cwi.nl, ac> lilia.alberghina at unimib.it, dan at biomed.bm.technion.ac.il, ac> hw at bio.vu.nl, brazma at ebi.ac.uk, Bo.Servenius at astrazeneca.com, ac> inge at ii.uib.no, bpn at mbb.ki.se, johnson at abo.fi, tmargus at ebc.ee, ac> nikob at cbs.dtu.dk, ukkonen at cs.helsinki.fi, vissing at exiqon.com, ac> daniel at decode.is, peleg at smi.stanford.edu, yeh at smi.stanford.edu, ac> apo at gbf.de, acl2 at cs.utexas.edu, H.Schmidt at DKFZ-Heidelberg.de, ac> agents at cs.umbc.edu, aiia at di.unito.it, alg at comm.toronto.edu, ac> amast at cs.utwente.nl, announce at tcos.org, andrea.massa at ing.unitn.it, ac> alessandro.bogliolo at uniurb.it, announcements.chi at acm.com, ac> appiar at ncc.up.pt, atp at logic.tuwien.ac.at, asci at twi.tudelft.nl, ac> bra-types at cs.chalmers.se, categories at mta.ca, ccl at dfki.uni-sb.de, ac> clp at iscs.nus.edu.sg, cofi-reactive at brics.dk, comm-theory at ieee.org, ac> concurrency at cwi.nl, conf at colmar.uha.fr, ac> confs-conferencesa at comsoc.org, coq at margaux.inria, ac> coq-club at pauillac.inria.fr, cs-logic at cs.indiana.edu, ac> csl at dbai.tuwien.ac.at, csp at carlit.toulouse.inra.fr, ac> dataloger at cs.chalmers.se, eacsl at dimi.uniud.it, ac> frdist-obj at distributedcoalition.org, eapls-request at mailbase.ac.uk, ac> eatcs-it-l at unifi.it, eatcs-it at cs.unibo.it, ecoop-info at ecoop.org, ac> facs at lboro.ac.uk, eapls at jiscmail.ac.uk, ercim at cnuce.cnr.it, ac> behavior at cs.ucsd.edu, formal-methods at cs.uidaho.edu, ac> fsdm at it.uq.edu.au, ifip-tc6 at informatik.rwth-aachen.de, ac> info-confs at comsoc.org, a_kapela at heart.med.upatras.gr, ac> hise-safety-critical at minster.cs.york.ac.uk, ifmsig at cs.tcd.ie, ac> info-hol at ultimate.cs.byu.edu, isabelle-users at cl.cam.ac.uk, ac> jml at cs.iastate.edu, lambda-usergroup at dcs.ed.ac.uk, ac> lfcs-interest at dcs.ed.ac.uk, itc at comsoc.org, ac> logic at theory.lcs.mit.edu, ac> news-announce-conferences at uunet.uu.net, softverf at nist.gov, ac> lics at research.bell-labs.com, logic-announce at uclink4.berkeley.edu, ac> logic-ml at logic.jaist.ac.jp, logic at cs.cornell.edu, ac> lotos-world at sanson.dit.upm.es, nqthm-users at cli.com, ac> nuprllist at cs.cornell.edu, nvti-list at cwi.nl, nwpt-info at sool.ioc.ee, ac> om-announce at lars.math.fsu.edu, papm at dcs.ed.ac.uk, ac> performance at haven.epm.ornl.gov, PetriNets at daimi.aau.dk, ac> prog-lang at daimi.aau.dk, prog-lang at diku.dk, pvs at csl.sri.com, ac> qed at mcs.anl.gov, reliable_computing at interval.usl.edu, ac> rewriting at ens-lyon.fr, seworld at cs.colorado.edu, ac> stochver at cs.bham.ac.uk, system-safety at listserv.gsfc.nasa.gov, ac> theorem-provers at ai.mit.edu, theory-a at vm1.nodak.edu, ac> theorynt at listserv.nodak.edu, vdm-forum at jiscmail.ac.uk, ac> zeves at ora.on.ca, zforum at prg.ox.ac.uk, Bart.Jacobs at cs.kun.nl, ac> comp-all at comp.lancs.ac.uk, traverso at itc.it, luca.degioia at unimib.it, ac> milanesi at itba.mi.cnr.it, paolo at dsi.unifi.it, furlan at itc.it, ac> laura.bonati at unimib.it, webmaster at systemsbiology.org, ac> Lchalif at bioinformatics.weizmann.ac.il, Info at isb-sib.ch, ac> Roslin.Bioinformatics at bbsrc.ac.uk, robin_deacle at ncbiotech.org, ac> cubic at maple.bioc.columbia.edu, staff at sbc.su.se, ac> drg at brc.dcs.gla.ac.uk, support at ebi.ac.uk, ac> admin at mail.cryst.bbk.ac.uk, ac> Queries at bioinf.man.ac.uk, director at bioinfo.ernet.in, ac> winhide at sanbi.ac.za, info at sanbi.ac.za, brutlag at stanford.edu, ac> kanehisa at kuicr.kyoto-u.ac.jp, goto at kuicr.kyoto-u.ac.jp, ac> nakaya at kuicr.kyoto-u.ac.jp, shuichi at kuicr.kyoto-u.ac.jp, ac> kaede at kuicr.kyoto-u.ac.jp, yuko at scl.kyoto-u.ac.jp, ac> chiaki at scl.kyoto-u.ac.jp, asako at scl.kyoto-u.ac.jp, ac> okuno at kuicr.kyoto-u.ac.jp, adeline at kuicr.kyoto-u.ac.jp, ac> hirakawa at kuicr.kyoto-u.ac.jp, park at kuicr.kyoto-u.ac.jp, ac> hattori at kuicr.kyoto-u.ac.jp, igarashi at kuicr.kyoto-u.ac.jp, ac> katayama at kuicr.kyoto-u.ac.jp, acyshzw at kuicr.kyoto-u.ac.jp, ac> kot at kuicr.kyoto-u.ac.jp, minowa at kuicr.kyoto-u.ac.jp, ac> itoh at kuicr.kyoto-u.ac.jp, hizukuri at kuicr.kyoto-u.ac.jp, ac> yoshi at kuicr.kyoto-u.ac.jp, takuji at kuicr.kyoto-u.ac.jp, ac> okuda at kuicr.kyoto-u.ac.jp, rikuhiro at kuicr.kyoto-u.ac.jp, ac> moriya at kuicr.kyoto-u.ac.jp, fujita at kuicr.kyoto-u.ac.jp, ac> sato at kuicr.kyoto-u.ac.jp, naobumi at kuicr.kyoto-u.ac.jp, ac> mtanaka at kuicr.kyoto-u.ac.jp, nati at kuicr.kyoto-u.ac.jp, ac> toshi at scl.kyoto-u.ac.jp, tomomi at scl.kyoto-u.ac.jp, ac> sanae at scl.kyoto-u.ac.jp, kayo at scl.kyoto-u.ac.jp, ac> tomoko at scl.kyoto-u.ac.jp, nobue at scl.kyoto-u.ac.jp, ac> megumi at scl.kyoto-u.ac.jp, rumiko at scl.kyoto-u.ac.jp, ac> atsuko at scl.kyoto-u.ac.jp, junko at scl.kyoto-u.ac.jp, ac> yuriko at scl.kyoto-u.ac.jp, yumi at scl.kyoto-u.ac.jp, ac> njunko at scl.kyoto-u.ac.jp, miho at scl.kyoto-u.ac.jp, ac> ktomoko at scl.kyoto-u.ac.jp, kana at scl.kyoto-u.ac.jp, ac> fukumoto at scl.kyoto-u.ac.jp, kanae at scl.kyoto-u.ac.jp, ac> kshirais at scl.kyoto-u.ac.jp, nishikaw at scl.kyoto-u.ac.jp, ac> ohkubo at scl.kyoto-u.ac.jp, uehara at scl.kyoto-u.ac.jp, ac> tonomura at scl.kyoto-u.ac.jp, furuta at scl.kyoto-u.ac.jp, ac> konya at scl.kyoto-u.ac.jp, yamazaki at scl.kyoto-u.ac.jp, ac> bioinformatics at ireland.com, rserra at oramont.it, axa at cs.purdue.edu, ac> casadio at kaiser.alma.unibo.it, Heiko.Mueller at eu.pnu.com, ac> Valencia at cnb.vam.es, Farisel at kaiser.alma.unibo.it, ac> gigi at lipid.biocomp.unibo.it, soda at dsi.unifi.it, vullo at dsi.unifi.it, ac> alex at mcculloch.ing.unifi.it, h-wilson at tamu.edu, jherreo at cnio.es, ac> aadil_raiyan at usa.net, ponarul at usa.net, ac> rajnishgupta73 at radiffmail.com, ac> ewi at gbf.de, abi at gbf.de, kse at gbf.de, hom at gbf.de, ili at gbf.de, ac> tcr at gbf.de, mch at gbf.de, ksl at gbf.de, vdr at gbf.de, dtj at cs.ucl.ac.uk, ac> lmiller at cs.iastate.edu, lhb at iastate.edu, xgai at iastate.edu, ac> melon at iq.usp.br, info at bioinformatics.buffalo.edu, info at ki.se, ac> sdavids at uwc.ac.za, steipe at lmb.uni-muenchen.de, ac> twclark at cs.uchicago.edu, ncox at genetics.bsd.uchicago.edu, ac> s-endy at uchicago.edu, efrank at hep.uchicago.edu, ac> dhl at genetics.bsd.uchicago.edu, rquigg at medicine.bsd.uchicago.edu, ac> ridg at cs.uchicago.edu ac> Subject: [BiO BB] ACM PPDP'03 Call for Papers ac> Reply-To: bio_bulletin_board at bioinformatics.org ac> Dear all, ac> Apologies for multiple copies of this message. Please circulate the ac> following call for papers to colleagues. ac> Best wishes, ac> Frank D. Valencia. ac> ------------------- ac> Call for Papers ac> Fifth ACM-SIGPLAN International Conference on ac> Principles and Practice of Declarative Programming ac> Uppsala, Sweden, 27-29 August 2003 ac> IMPORTANT DATES ac> Submission 29 March 2003 ac> Notification 12 May 2003 ac> Final Version 13 June 2003 ac> WEB SITES ac> PPDP 2003: http://www.it.uu.se/ppdp03/ ac> PLI 2003: http://www.it.uu.se/pli03/ ac> PPDP: http://pauillac.inria.fr/~fages/PPDP/. ac> TOPICS (Not exhaustive): Logic and Constraint Programming; Functional ac> Programming; Object-Oriented Programming; Concurrent Extensions; ac> Mobile Computing; Integration of Paradigms; Proof Theoretic and ac> Semantic Foundations; Program Design and Development; Type and Module ac> Systems; Program Analysis and Verification; Program Transformation; ac> Abstract Machines and Compilation; Programming Environments; and ac> Application of Declarative Programming. ac> CONFERENCE CHAIR: Konstantinos Sagonas, Uppsala University ac> http://www.csd.uu.se/~kostis, email: kostis at it.uu.se ac> PROGRAM CHAIR: Dale Miller, INRIA/Futurs & Ecole polytechnique ac> http://www.lix.polytechnique.fr/Labo/Dale.Miller, ac> email: Dale.Miller at inria.fr ac> PROGRAM COMMITTEE ac> Maria Alpuente, Univ. Politecnica de Valencia, ES ac> Alessandra Di Pierro, Univ. of Pisa, IT ac> Masami Hagiya, Univ. of Tokyo, JP ac> Fergus Henderson, Univ. of Melbourne, AU ac> Alberto Momigliano, Univ. of Leicester, UK ac> Benjamin Pierce, Univ. of Pennsylvania, US ac> C.R. Ramakrishnan, SUNY Stony Brook, US ac> Mario Rodriguez Artalejo, Univ. Complutense, ES ac> Amr Sabry, Univ. of Indiana, US ac> Konstantinos Sagonas, Uppsala University, SW ac> Frank Valencia, Uppsala University, SW ac> PREVIOUS PPDP CONFERENCES ac> Paris (1999), Montreal (2000), Firenze (2001), Pittsburgh (2002). ac> SCOPE OF THE CONFERENCE: PPDP 2003 aims to stimulate research in the ac> use of logical formalisms and methods for analyzing, specifying, and ac> performing computations. Of general interest are all aspects ac> surrounding declarative programming paradigms such as logic ac> programming, functional logic programming, and constraint programming. ac> Topics of more specific interest are enhancements to such formalisms ac> with mechanisms for concurrency, mobility, modularity, ac> object-orientation, and static analysis, as well as the fuller ac> exploitation of the programming-as-proof-search framework through new ac> designs and improved implementation methods. At the level of ac> methodology, the use of logic based principles in the design of tools ac> for program development, analysis, and verification relative to all ac> programming paradigms is of interest. Papers related to the use of ac> declarative paradigms and tools in industry and education are ac> especially solicited. This list is not exhaustive: submissions ac> related to new and interesting ideas relating broadly to declarative ac> programming are encouraged. Prospective authors are welcome to ac> communicate with the Program Chair about the suitability of a specific ac> topic. ac> PAPER SUBMISSIONS: Submissions must be made on or before 29 March ac> 2003, noon Central European Time and must be no more than 12 pages ac> (including bibliography and appendices) and in standard ACM conference ac> format: detailed formatting guidelines are available at ac> http://www.acm.org/sigs/pubs/proceed/template.html, along with ac> formatting templates or style files for LaTeX, Word Perfect, and Word. ac> Proceedings will be published by ACM Press. Authors of accepted ac> papers will be required to sign the ACM copyright form. Submissions ac> will be carried out electronically via the Web via a link found at the ac> conference web page. Papers must be submitted in either PDF format or ac> as PostScript documents that are interpretable by Ghostscript. Papers ac> must describe original, previously unpublished work that has not been ac> simultaneously submitted for publication elsewhere. They must be ac> written in English, must have a cover page with an abstract of up to ac> 200 words, keywords, postal and electronic mailing addresses, and ac> phone and fax numbers of the corresponding author. Authors who wish ac> to provide additional material to the reviewers beyond the 12-page ac> limit can do so in clearly marked appendices: reviewers are not ac> required to read such appendices. Submissions that do not meet these ac> guidelines may not be considered. ac> CONFERENCE VENUE AND RELATED EVENTS: PPDP 2003 is part of a federation ac> meeting known as Principles, Logics and Implementations of high-level ac> programming languages (PLI 2003) which includes the ACM SIGPLAN ac> International Conference on Functional Programming (ICFP 2003). PLI ac> will run from 25 - 29 August 2003. The meetings will take place on ac> the Uppsala University campus. ac> AFFILIATED WORKSHOPS: Proposals are solicited for PLI 2003 affiliated ac> workshops. Details about the submission of proposals are available ac> from the PLI 2003 web site. The deadline for workshop proposals is 14 ac> February 2003. ac> STUDENT ATTENDEES: Students who have a paper accepted for the ac> conference are offered student membership in SIGPLAN free for one ac> year. As members of SIGPLAN they may apply for travel fellowships ac> from the PAC fund. ac> -- ac> ========================================================================= ac> Frank D. Valencia ac> PostDoctoral Researcher in Computer Science ac> Uppsala University, Sweden. ac> office phone: +46 18 471 1030 ac> mobile: +46 7358 20376 ac> e-mai: frankv at it.uu.se ac> http://user.it.uu.se/~frankv ac> ========================================================================== ac> --__--__-- ac> _______________________________________________ ac> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org ac> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board ac> End of BiO_Bulletin_Board Digest ac> _______________________________________________ ac> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org ac> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board -- A.J. Rossini Rsrch. Asst. Prof. of Biostatistics U. of Washington Biostatistics rossini at u.washington.edu FHCRC/SCHARP/HIV Vaccine Trials Net rossini at scharp.org -------------- http://software.biostat.washington.edu/ ---------------- FHCRC: M: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX (my tuesday/wednesday/friday locations are completely unpredictable.)