[BiO BB] Affymetrix Data
A.J. Rossini
rossini at blindglobe.net
Thu Jan 30 12:30:43 EST 2003
Look at the BioConductor suite, which does that (and lets you
"redesign" probe <-> gene mappings, should you wish), as well as
having a range of normalization algorithms...
http://www.bioconductor.org/
>>>>> "ac" == a craig <a.craig> writes:
ac> Dear List,
ac> Does anyone know of any publicly available code for extracting individual
ac> perfect match and mismatch intensities for each probe pair of an affymetrix
ac> chip.
ac> Best wishes,
ac> Andrew Craig
ac> -----Original Message-----
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ac> Today's Topics:
ac> 1. ACM PPDP'03 Call for Papers (Frank D. Valencia)
ac> --__--__--
ac> Message: 1
ac> Date: Thu, 30 Jan 2003 14:17:49 +0100
ac> From: "Frank D. Valencia" <frankv at it.uu.se>
ac> To: Corrado Priami <priami at dit.unitn.it>
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ac> ridg at cs.uchicago.edu
ac> Subject: [BiO BB] ACM PPDP'03 Call for Papers
ac> Reply-To: bio_bulletin_board at bioinformatics.org
ac> Dear all,
ac> Apologies for multiple copies of this message. Please circulate the
ac> following call for papers to colleagues.
ac> Best wishes,
ac> Frank D. Valencia.
ac> -------------------
ac> Call for Papers
ac> Fifth ACM-SIGPLAN International Conference on
ac> Principles and Practice of Declarative Programming
ac> Uppsala, Sweden, 27-29 August 2003
ac> IMPORTANT DATES
ac> Submission 29 March 2003
ac> Notification 12 May 2003
ac> Final Version 13 June 2003
ac> WEB SITES
ac> PPDP 2003: http://www.it.uu.se/ppdp03/
ac> PLI 2003: http://www.it.uu.se/pli03/
ac> PPDP: http://pauillac.inria.fr/~fages/PPDP/.
ac> TOPICS (Not exhaustive): Logic and Constraint Programming; Functional
ac> Programming; Object-Oriented Programming; Concurrent Extensions;
ac> Mobile Computing; Integration of Paradigms; Proof Theoretic and
ac> Semantic Foundations; Program Design and Development; Type and Module
ac> Systems; Program Analysis and Verification; Program Transformation;
ac> Abstract Machines and Compilation; Programming Environments; and
ac> Application of Declarative Programming.
ac> CONFERENCE CHAIR: Konstantinos Sagonas, Uppsala University
ac> http://www.csd.uu.se/~kostis, email: kostis at it.uu.se
ac> PROGRAM CHAIR: Dale Miller, INRIA/Futurs & Ecole polytechnique
ac> http://www.lix.polytechnique.fr/Labo/Dale.Miller,
ac> email: Dale.Miller at inria.fr
ac> PROGRAM COMMITTEE
ac> Maria Alpuente, Univ. Politecnica de Valencia, ES
ac> Alessandra Di Pierro, Univ. of Pisa, IT
ac> Masami Hagiya, Univ. of Tokyo, JP
ac> Fergus Henderson, Univ. of Melbourne, AU
ac> Alberto Momigliano, Univ. of Leicester, UK
ac> Benjamin Pierce, Univ. of Pennsylvania, US
ac> C.R. Ramakrishnan, SUNY Stony Brook, US
ac> Mario Rodriguez Artalejo, Univ. Complutense, ES
ac> Amr Sabry, Univ. of Indiana, US
ac> Konstantinos Sagonas, Uppsala University, SW
ac> Frank Valencia, Uppsala University, SW
ac> PREVIOUS PPDP CONFERENCES
ac> Paris (1999), Montreal (2000), Firenze (2001), Pittsburgh (2002).
ac> SCOPE OF THE CONFERENCE: PPDP 2003 aims to stimulate research in the
ac> use of logical formalisms and methods for analyzing, specifying, and
ac> performing computations. Of general interest are all aspects
ac> surrounding declarative programming paradigms such as logic
ac> programming, functional logic programming, and constraint programming.
ac> Topics of more specific interest are enhancements to such formalisms
ac> with mechanisms for concurrency, mobility, modularity,
ac> object-orientation, and static analysis, as well as the fuller
ac> exploitation of the programming-as-proof-search framework through new
ac> designs and improved implementation methods. At the level of
ac> methodology, the use of logic based principles in the design of tools
ac> for program development, analysis, and verification relative to all
ac> programming paradigms is of interest. Papers related to the use of
ac> declarative paradigms and tools in industry and education are
ac> especially solicited. This list is not exhaustive: submissions
ac> related to new and interesting ideas relating broadly to declarative
ac> programming are encouraged. Prospective authors are welcome to
ac> communicate with the Program Chair about the suitability of a specific
ac> topic.
ac> PAPER SUBMISSIONS: Submissions must be made on or before 29 March
ac> 2003, noon Central European Time and must be no more than 12 pages
ac> (including bibliography and appendices) and in standard ACM conference
ac> format: detailed formatting guidelines are available at
ac> http://www.acm.org/sigs/pubs/proceed/template.html, along with
ac> formatting templates or style files for LaTeX, Word Perfect, and Word.
ac> Proceedings will be published by ACM Press. Authors of accepted
ac> papers will be required to sign the ACM copyright form. Submissions
ac> will be carried out electronically via the Web via a link found at the
ac> conference web page. Papers must be submitted in either PDF format or
ac> as PostScript documents that are interpretable by Ghostscript. Papers
ac> must describe original, previously unpublished work that has not been
ac> simultaneously submitted for publication elsewhere. They must be
ac> written in English, must have a cover page with an abstract of up to
ac> 200 words, keywords, postal and electronic mailing addresses, and
ac> phone and fax numbers of the corresponding author. Authors who wish
ac> to provide additional material to the reviewers beyond the 12-page
ac> limit can do so in clearly marked appendices: reviewers are not
ac> required to read such appendices. Submissions that do not meet these
ac> guidelines may not be considered.
ac> CONFERENCE VENUE AND RELATED EVENTS: PPDP 2003 is part of a federation
ac> meeting known as Principles, Logics and Implementations of high-level
ac> programming languages (PLI 2003) which includes the ACM SIGPLAN
ac> International Conference on Functional Programming (ICFP 2003). PLI
ac> will run from 25 - 29 August 2003. The meetings will take place on
ac> the Uppsala University campus.
ac> AFFILIATED WORKSHOPS: Proposals are solicited for PLI 2003 affiliated
ac> workshops. Details about the submission of proposals are available
ac> from the PLI 2003 web site. The deadline for workshop proposals is 14
ac> February 2003.
ac> STUDENT ATTENDEES: Students who have a paper accepted for the
ac> conference are offered student membership in SIGPLAN free for one
ac> year. As members of SIGPLAN they may apply for travel fellowships
ac> from the PAC fund.
ac> --
ac> =========================================================================
ac> Frank D. Valencia
ac> PostDoctoral Researcher in Computer Science
ac> Uppsala University, Sweden.
ac> office phone: +46 18 471 1030
ac> mobile: +46 7358 20376
ac> e-mai: frankv at it.uu.se
ac> http://user.it.uu.se/~frankv
ac> ==========================================================================
ac> --__--__--
ac> _______________________________________________
ac> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
ac> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
ac> End of BiO_Bulletin_Board Digest
ac> _______________________________________________
ac> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
ac> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
--
A.J. Rossini Rsrch. Asst. Prof. of Biostatistics
U. of Washington Biostatistics rossini at u.washington.edu
FHCRC/SCHARP/HIV Vaccine Trials Net rossini at scharp.org
-------------- http://software.biostat.washington.edu/ ----------------
FHCRC: M: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email
UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX
(my tuesday/wednesday/friday locations are completely unpredictable.)
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