From jeff at bioinformatics.org Sat Mar 15 16:05:39 2003 From: jeff at bioinformatics.org (J.W. Bizzaro) Date: Sat, 15 Mar 2003 16:05:39 -0500 Subject: [BiO BB] Call for posters: 2003 IEEE Computer Society Bioinformatics Conference (CSB2003) Message-ID: <3E7395A3.4040208@bioinformatics.org> Call for Posters You are invited to submit a poster to the 2003 IEEE Computer Society Bioinformatics Conference (CSB2003). Poster presentations describing original research in almost any area that involves the development and application of advanced computational methods for biological problems are welcome. It is recommended that you submit your abstract as early as possible to avoid disappointment due to space limitations. CSB2003 will accept 100 posters for presentation, and those accepted posters with abstracts submitted before midnight PDT May 22, 2003 will be published in the IEEE conference proceedings. Proceedings authors are entitled to two pages free of charge and may purchase additional pages for inclusion (and pages in color) for a fee payable to IEEE Publications. Topics of interest include (but are not limited to): Machine learning Data Mining Robotics Data Visualization Regulatory Networks Comparative Genomics Pattern Recognition String and Graph Algorithms Genome to Life Stochastic Modeling Genomics and Proteomics Gene Expression Pathways Evolution and Phylogenetics Molecular Structures and Interactions Abstracts should be no more than 250 words. Submit poster abstracts electronically using the form available here. At least one of the poster authors must be present at the conference. The size of the poster board is 36 x 48 inches (91 x 122 cm.). Posters will be affixed to the poster board using pushpins. No electrical support or Internet connections are available in the Poster session area. The Best Poster will be selected by the Poster Committee and announced at the awards ceremony. Abstracts must be submitted no later than midnight PDT July 25, 2003. The submitter will be notified of their submission's status within 14 calendar days after submission. In some cases, the committee may request modifications to the abstracts prior to acceptance. Important Dates Proceedings submission deadline: May 22, 2003 (must have submitted by this date to published in the Proceedings) Submission deadline: July 25, 2003 Send e-mail queries to: stevem at ucdavis-alumni.com Poster Chair: Steve Madden, stevem at ucdavis-alumni.com, 408-553-7225 The Call-For-Posters is available as a downloadable PDF file. We would greatly appreciate if you would print it and post it where it can be seen by your colleagues. http://conferences.computer.org/bioinformatics/CSB2003/Poster.html From Suman.Rawat at Dartmouth.EDU Tue Mar 18 11:11:22 2003 From: Suman.Rawat at Dartmouth.EDU (Suman Rawat) Date: 18 Mar 2003 11:11:22 EST Subject: [BiO BB] Re: help on biostat courseware Message-ID: <10841652@newblitzen.Dartmouth.EDU> Can you provide me with the basic materilas / books / websites on the USE OF STATISTICAL METHODOLOGY IN BIOINFORMATICS Suman Rawat Department of Biological Sciences Dartmouth College From brunomiguel at dequim.ist.utl.pt Tue Mar 18 11:18:56 2003 From: brunomiguel at dequim.ist.utl.pt (Bruno Afonso) Date: Tue, 18 Mar 2003 16:18:56 +0000 Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: <10841652@newblitzen.Dartmouth.EDU> References: <10841652@newblitzen.Dartmouth.EDU> Message-ID: <3E7746F0.6020002@dequim.ist.utl.pt> Suman Rawat wrote: > Can you provide me with the basic materilas / books / websites on the USE OF STATISTICAL METHODOLOGY IN BIOINFORMATICS > > Suman Rawat > Department of Biological Sciences > Dartmouth College > > _______________________________________________ > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board Biological Sequence Analysis. -- Bruno Miguel Afonso Biological Eng Student DEQ,IST - Portugal brunomiguel at dequim.ist.utl.pt From rong at bu.edu Tue Mar 18 11:44:45 2003 From: rong at bu.edu (Rong Chen) Date: Tue, 18 Mar 2003 11:44:45 -0500 (EST) Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: <10841652@newblitzen.Dartmouth.EDU> Message-ID: I would say that learning how to write SAS code and interpolate SAS output is the fastest and most effect way to learn statistics for bioinformatist. rong Rong Chen Ph.D. Candidate Bioinformatics Program Boston University Boston, MA 02148 Tel: (617)358-1552 Fax: (617)358-1067 E-mail: rong at bu.edu http://zlab.bu.edu/~rong On 18 Mar 2003, Suman Rawat wrote: > Can you provide me with the basic materilas / books / websites on the > USE OF STATISTICAL METHODOLOGY IN BIOINFORMATICS > > Suman Rawat > Department of Biological Sciences > Dartmouth College > > _______________________________________________ > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > From c.johnston at mail.cryst.bbk.ac.uk Wed Mar 19 09:48:29 2003 From: c.johnston at mail.cryst.bbk.ac.uk (CAROLINE EMMA JOHNSTON) Date: Wed, 19 Mar 2003 14:48:29 +0000 (GMT Standard Time) Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: <10841652@newblitzen.Dartmouth.EDU> Message-ID: Have a look at the R (an open source version of S) website at www.r-project.org check out the bioconductor section (esp the vignettes), it's a sub-project of R focused on bioinformatics. What exactly are you looking for? Sequence analysis? Microarray analysis? Cxx. On 18 Mar 2003, Suman Rawat wrote: > Date: 18 Mar 2003 11:11:22 EST > From: Suman Rawat > Reply-To: bio_bulletin_board at bioinformatics.org > To: bio_bulletin_board at bioinformatics.org > Subject: Re: [BiO BB] Re: help on biostat courseware > > Can you provide me with the basic materilas / books / websites on the USE OF STATISTICAL METHODOLOGY IN BIOINFORMATICS > > Suman Rawat > Department of Biological Sciences > Dartmouth College > > _______________________________________________ > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > From Suman.Rawat at Dartmouth.EDU Wed Mar 19 11:13:34 2003 From: Suman.Rawat at Dartmouth.EDU (Suman Rawat) Date: 19 Mar 2003 11:13:34 EST Subject: [BiO BB] Re: help on biostat courseware Message-ID: <10878156@newblitzen.Dartmouth.EDU> An embedded and charset-unspecified text was scrubbed... Name: not available URL: From hz5 at njit.edu Thu Mar 20 16:25:06 2003 From: hz5 at njit.edu (hz5 at njit.edu) Date: Thu, 20 Mar 2003 16:25:06 -0500 (EST) Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: <10878156@newblitzen.Dartmouth.EDU> References: <10878156@newblitzen.Dartmouth.EDU> Message-ID: <1048195506.3e7a31b29288a@webmail.njit.edu> Use R, really good! Haibo Quoting Suman Rawat : > I am looking for microarray analysis > > Suman Rawat, Ph.D > Department of Biological Sciences > HB 6044 > Gilman Lab, Dartmouth College > Hanover, NH 03755 > Phone: 603 646 0355 > 603 646 0503 > FAX : 603 646 1347 > _______________________________________________ > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > From Suman.Rawat at Dartmouth.EDU Fri Mar 21 15:16:06 2003 From: Suman.Rawat at Dartmouth.EDU (Suman Rawat) Date: 21 Mar 2003 15:16:06 EST Subject: [BiO BB] Re: help on biostat courseware Message-ID: <10958330@newblitzen.Dartmouth.EDU> An embedded and charset-unspecified text was scrubbed... Name: not available URL: From lcephas at buffalo.edu Fri Mar 21 09:41:53 2003 From: lcephas at buffalo.edu (Lesley Cephas) Date: Fri, 21 Mar 2003 09:41:53 -0500 Subject: [BiO BB] Frontiers in Bioinformatics Message-ID: <000201c2efb8$05a97dd0$02010a0a@bioinformatics.buffalo.edu> We cordially invite you to attend the First Annual Frontiers in Bioinformatics Symposium, organized by the Center of Excellence in Bioinformatics at the University at Buffalo, State University of New York. This international symposium will emphasize cutting edge science essential for progress in the post genomic era. Session topics will include: * protein structure and function prediction * prediction of protein-protein interactions * evolutionary genomics * large-scale biological simulations * ligand docking * protein pathways * expression array analysis Confirmed speakers: Amos Bairoch (Swiss Institute of Bioinformatics) Carol Post (Purdue University) Charles L. Brooks, III, (Scripps, La Jolla) Monica Riley (Woods Hole) Sir Sir Tom Blundell (University of Cambridge) Andrej Sali (UCSF) Rita Casadio (University of Bologna) Dietmar Schomberg (University of Cologne) Ron Elber (Cornell University) Harold Scheraga (Cornell University) David Eisenberg (UCLA) Klaus Schulten (University of Illinois) Adrian Elcock (University of Iowa) Eugene Shakhnovich (Harvard University) Herbert Hauptman (Hauptman Woodward) Jeffrey Skolnick (University at Buffalo) Robert Jernigan (Iowa State University) Paul Spellman (LBL) Minoru Kanehisa (Kyoto University) Gustavo Stolovitzky (IBM) Eugene Koonin (NIH) Sarah Teichmann (MRC, Cambridge) Michael Levitt (Stanford University) Ilya Vakser (SUNY, Stony Brook) Ruth Nussinov (NIH) Alfonso Valencia (CNB-CSIC) Zoltvan Oltvai (Northwestern University) Attendees will have the opportunity to present posters throughout the symposium. Send a request for poster presentation instructions to bceb at buffalo.edu. The Symposium begins at 8:00am Friday, June 6, 2003 and ends at 6:00pm on Sunday, June 8, 2003. All events will be held at the Adam's Mark Hotel at 120 Church Street in downtown Buffalo. Registration Registration for the symposium is on a first-come, first-served basis. The registration fees are: Graduate Students and Post-docs On or before May 15, 2003: $175 After May 15, 2003: $200 All other Attendees On or before May 15, 2003: $250 After May 15, 2003: $275 Please submit the attached registration form with payment. A limited number of registration scholarships will be available to graduate students and post-docs. Requests for scholarship applications should be sent to bceb at buffalo.edu If you have any questions regarding the symposium, please call (716) 849-6719 or e-mail your questions to bceb at buffalo.edu. We look forward to seeing you in June! Best regards, Lesley K. Cephas Center of Excellence in Bioinformatics University at Buffalo - SUNY 901 Washington Street, Ste. 300 Buffalo, NY 14203-1199 (716) 849-6719 VOICE (716) 849-6747 FAX -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Registration Form.pdf Type: application/pdf Size: 80961 bytes Desc: not available URL: From vicky at insilicolabs.com Tue Mar 18 14:39:14 2003 From: vicky at insilicolabs.com (Vicky Markstein) Date: Tue, 18 Mar 2003 11:39:14 -0800 Subject: [BiO BB] IEEE Computer Society Bioinformatics Conference Message-ID: Dear colleague, We would greatly appreciated it if you could post the CSB2003 Call For Papers to your mailing list. We are a new group and need the help of the community to let everyone know about the conference. Also we would be glad to reciprocate in whatever way we can. For instance we could post your link on our website http://conferences.computer.org/bioinformatics. If this is of interest to you, please send link details to Jean Tsukamoto (jeantsukamoto at earthlink.net). Thanks, ++++++++++++++++++++++++++++++++++++++++++++++++++++++ URGENT DEADLINE PAPER submission date April 1, 2003 For IEEE Computer Society Bioinformatics Conference Stanford, California August 11-14, 2003 There are only 13 days left to submit your paper to CSB2003. Please check your calendars and make sure your submission reaches us by the APRIL 1ST DEADLINE! You are invited to submit a paper to the 2003 IEEE Computer Society Bioinformatics Conference (CSB2003). The conference?s goal is to facilitate collaboration between computer scientists and biologists by presenting cutting edge computational biology research findings. While such research has an interdisciplinary character, CSB2003 emphasizes the computational aspects of bioinformatics research. Computer science papers must show biological relevance, and biology papers must stress the computational aspects of the results. CSB2003 will accept 27 papers for podium presentation, and these will be published in the IEEE conference proceedings. Topics of interest include (but are not limited to): ? Machine learning ? String & Graph Algorithms ? Data Mining ? Genome to Life ? Robotics ? Stochastic Modeling ? Data Visualization ? Genomics and Proteomics ? Regulatory Networks ? Gene Expression Pathways ? Comparative Genomics ? Evolution and Phylogenetics ? Pattern Recognition ? Molecular Structures & Interactions Papers are limited to 12 pages, single spaced, in 12 point type, including title, abstract (250 words or less), figures, tables, text, and bibliography. The first page should give keywords, authors? postal and electronic mailing addresses. Submit papers electronically to bioinformatics at computer.org in either postscript or PDF format. A select subset of accepted papers will be invited to also publish in the Journal of Bioinformatics and Computational Biology (http://www.worldscinet.com/jbcb/jbcb.shtml). The Best Paper will be selected by the Program Committee and announced at the awards ceremony. An HP laptop will be given to the first author of the Best Paper.- Submissions must be received no later than April 1, 2003. Authors will be notified of their submission's status by May 19, 2003, and final corrected versions must be received by June 14, 2003. Important Dates ? Submission date: April 1,2003 ? Acceptance date: May 19, 2003 ? Final Revision date: June 14, 2003 Send e-mail queries or submissions to bioinformatics at computer.org See website for POSTER submissions http://conferences.computer.org/bioinformatics General Chair: Vicky Markstein, vicky at insilicolabs.com 650-851-8399 Program Co-chairs: Peter Markstein, peter_markstein at hp.com, 650-857-6662 Ying Xu, xyn at ornl.gov, 865-574-7263 Program Committee: Serafim Batzoglou, Stanford University Suchendra M. Bhandarkar, University of Georgia Mark Borodovsky, Georgia Institute of Technology Nikolaos Bourbakis, Wright State University Jake Chen, Myriad Proteomics Mark Craven, University of Wisconsin Antoine Danchin, Institute Pasteur Charles Dyer, University of Wisconsin at Madison Mike Eisen, Lawrence-Berkeley Lab Paolo Frasconi, University of Florence Terry Gaasterland, Rockefeller University Sridhar Govindarajan, Maxygen Roderic Guig?, Grup de Recerca en Informatica Biomedica, Barcelona Peter Hammer, Rutgers University Bailin Hao, Academia Sinica Ming Li, University of Waterloo Xiaole Shirley Liu, Harvard University Ann Loraine, Affymetrix Corp Peter Markstein, Hewlett-Packard Co. Satoru Miyano, University of Tokyo Sean Mooney, Stanford University Ruth Nussinov, National Cancer Institute and Tel Aviv University Antonio Piccolboni, Affymetrix Corp. Walter L. Ruzzo, University of Washington Gustavo Stolovitzky, IBM Liping Wei, Nexus Genomics Dong Xu, Oak Ridge National Laboratory Ying Xu, Oak Ridge National Laboratory ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Vicky Markstein, IEEE CS Bioinformatics Technical Chair Bioinformatics at computer.org http://conferences.computer.org/bioinformatics office: 650-851-4588 mobile: 650-269-1635 fax: 650-851-8643 From hz5 at njit.edu Mon Mar 24 10:26:14 2003 From: hz5 at njit.edu (hz5 at njit.edu) Date: Mon, 24 Mar 2003 10:26:14 -0500 (EST) Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: <10958330@newblitzen.Dartmouth.EDU> References: <10958330@newblitzen.Dartmouth.EDU> Message-ID: <1048519574.3e7f239618733@webmail.njit.edu> http://www.r-project.org/ And I am sure you can find a modual liberary already developed for Affy data analysis. GL Quoting Suman Rawat : > do you have the link? > > Suman > _______________________________________________ > BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board > ========================================================= Haibo Zhang, PhD student Computational Biology, NJIT & Rutgers University Center for Applied Genomics, PHRI http://afs13.njit.edu/~hz5 From jgentry at jimmy.harvard.edu Mon Mar 24 11:23:35 2003 From: jgentry at jimmy.harvard.edu (Jeff Gentry) Date: Mon, 24 Mar 2003 11:23:35 -0500 (EST) Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: <1048519574.3e7f239618733@webmail.njit.edu> Message-ID: > http://www.r-project.org/ > And I am sure you can find a modual liberary already developed for Affy data > analysis. A bit of a shameless plug, but the primary project for bioinformatics using R is the Bioconductor project (with several members of the R core team as core members of the BioC group as well): www.bioconductor.org From thomas at fkogtsp1.bmc.uu.se Mon Mar 24 11:37:22 2003 From: thomas at fkogtsp1.bmc.uu.se (Thomas Sicheritz-Ponten) Date: Mon, 24 Mar 2003 17:37:22 +0100 (CET) Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: Message-ID: On Mon, 24 Mar 2003, Jeff Gentry wrote: > > http://www.r-project.org/ > > And I am sure you can find a modual liberary already developed for Affy data > > analysis. May I recommend the affyR package? http://www.cbs.dtu.dk/staff/laurent/download/affyR/ The affyR package is an R open and documented package to use oligonucleotide microarrays data. For the moment it is limited to Affymetrix data, but will hopefully extends to other formats as oligonucleotides arrays develop. cheers -thomas Sicheritz-Ponten Thomas, Ph.D, thomas at biopython.org ( Center for Biological Sequence Analysis \ BioCentrum-DTU, Technical University of Denmark ) CBS: +45 45 252485 Building 208, DK-2800 Lyngby ##-----> Fax: +45 45 931585 http://www.cbs.dtu.dk/thomas ) / ... damn arrow eating trees ... ( From jgentry at jimmy.harvard.edu Tue Mar 25 06:04:38 2003 From: jgentry at jimmy.harvard.edu (Jeff Gentry) Date: Tue, 25 Mar 2003 06:04:38 -0500 (EST) Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: Message-ID: > May I recommend the affyR package? > http://www.cbs.dtu.dk/staff/laurent/download/affyR/ You can, but .... > The affyR package is an R open and documented package to use oligonucleotide > microarrays data. For the moment it is limited to Affymetrix data, but will > hopefully extends to other formats as oligonucleotides arrays develop. affyR is outdated and was replaced by the "affy" package in Bioconductor. Laurent is one of the main authors of the affy package in Bioconductor. From masulli at disi.unige.it Tue Mar 25 13:18:49 2003 From: masulli at disi.unige.it (Francesco Masulli) Date: Tue, 25 Mar 2003 19:18:49 +0100 Subject: [BiO BB] 1-day workshop on BIOINFORMATICS AND BIOSTATISTICS June 4, 2003, Vietri Sul Mare, Salerno, ITALY Message-ID: <200303251918.49626.masulli@disi.unige.it> 1-day workshop on BIOINFORMATICS AND BIOSTATISTICS June 4, 2003, Vietri Sul Mare, Salerno, ITALY http://siren.dsi.unimi.it/indice2.html The day before the WIRN VIETRI `03, XIV ITALIAN WORKSHOP ON NEURAL NETS (http://siren.dsi.unimi.it/indice2.html) we are organizing a Pre-WIRN workshop on BIOINFORMATICS AND BIOSTATISTICS We encurage the submission to the workshop of contributions using machine learning and soft computing (i.e.,neural networks, fuzzy sets and systems, evolutionary computation) approaches to bioinformatics or biostatistics. Two invited lectures will be delivered in the morning, while regular contributions will be presented in the afternoon. The registration is free, and the contribution abstracts will be available on the SIREN web-site. Authors willing to submit also papers to be published on the WIRN 2003 proceedings must register to the whole conference. Schedule Abstracts Due: April 10, 2003 Papers (6 pages) Due: April 15, 2003 Replies to Authors: April 30, 2003 Revised Papers Due: June 15, 2003 Best Regards, Francesco Masulli, University of Pisa (Italy) masulli at di.unipi.it Roberto Tagliaferri, University of Salerno (Italy), robtag at unisa.it From jeff at bioinformatics.org Tue Mar 25 23:26:20 2003 From: jeff at bioinformatics.org (J.W. Bizzaro) Date: Tue, 25 Mar 2003 23:26:20 -0500 Subject: [BiO BB] Reminder: Bioinformatics.Org at Bio-ITWorld Message-ID: <3E812BEC.4060202@bioinformatics.org> Bioinformatics.Org will have a booth (#1321) at the Bio-ITWorld Conference and Expo, Wednesday and Thursday (March 26 and 27). This is at the Hynes Convention Center, Boston, Massachusetts. Website for Bio-ITWorld: http://www.bioitworldexpo.com/ You may register on-site or online, priority code "BNF". Online registration: http://www.bioitworldexpo.com/boston03/V33/index.cvn?ID=10097 We hope to see you there! Cheers. Jeff -- J.W. Bizzaro jeff at bioinformatics.org President, Bioinformatics.Org http://bioinformatics.org/~jeff "As we enjoy great advantages from the inventions of others, we should be glad of an opportunity to serve others by any invention of ours; and this we should do freely and generously." -- Benjamin Franklin -- From vidyot at hotmail.com Thu Mar 27 06:06:24 2003 From: vidyot at hotmail.com (Vidya Dhote) Date: Thu, 27 Mar 2003 16:36:24 +0530 Subject: [BiO BB] (no subject) Message-ID: Hi, I am looking for a program that will help me to generate a tree-like representation of genes clustered according to Gene Ontology hierarchy. Can someone help me? I would prefer some Java applet perhaps. Thanks, VT. _________________________________________________________________ Visit Malaysia. Win a free trip! http://server1.msn.co.in/msnspecials/malaysiatourism/index.asp Have an exotic holiday From vidyot at hotmail.com Thu Mar 27 06:12:20 2003 From: vidyot at hotmail.com (Vidya Dhote) Date: Thu, 27 Mar 2003 16:42:20 +0530 Subject: [BiO BB] (no subject) Message-ID: Hi, I am looking for a program that will help me to generate dynamically a tree-like representation of genes clustered according to Gene Ontology hierarchy. Can someone help me? A Java applet will serve my purpose perhaps. Thanks, VT. _________________________________________________________________ War on Iraq. See latest update. http://server1.msn.co.in/completecoverage/bushvssaddam/ News, views and more From sebastien.vachenc at free.fr Thu Mar 27 08:31:44 2003 From: sebastien.vachenc at free.fr (Sebastien VACHENC) Date: Thu, 27 Mar 2003 14:31:44 +0100 (CET) Subject: [BiO BB] Swissprot parser Message-ID: <1048771904.3e82fd4079373@imp.free.fr> Hi, I'm looking for a swissprot entries parser (in Perl , I prefer...) Thanks, S?bastien ################################# S?bastien VACHENC Pr?sident de l'association du DESS RGTI (D'GIN) Association D'GIN Facult? des sciences UHP Nancy1 Campus scientifiques 54 006 VANDOEUVRE-LES-NANCY asso_dgin at yahoo.fr http://www.genomique.uhp-nancy.fr http://www.genomique.uhp-nancy.fr/Site_web_DGIN/index.htm From sanges at iigb.na.cnr.it Thu Mar 27 13:54:31 2003 From: sanges at iigb.na.cnr.it (Remo Sanges) Date: Thu, 27 Mar 2003 19:54:31 +0100 Subject: [BiO BB] Re: Swissprot parser References: <20030327170108.85070D26F6@www.bioinformatics.org> Message-ID: <3E8348E7.4000701@iigb.na.cnr.it> > I'm looking for a swissprot entries parser (in Perl , I prefer...) > Take a look at BioPerl! http://bioperl.org http://doc.bioperl.org There is a module Bio::SeqIO::swiss that can create a Seq object for every entry in a swiss-prot flat-file in order to parse it Remo Sanges BioGeM - Naples From david_aaron at softhome.net Thu Mar 27 21:43:24 2003 From: david_aaron at softhome.net (David Guzman) Date: 27 Mar 2003 22:43:24 -0400 Subject: [Bio BB] Swissprot parser Message-ID: <1048819405.3628.4.camel@mandrake> Hi: Check bioperl project, (bioperl-db and biosql schema) in http://bioperl.org/ Regards David From prasadp77ie at yahoo.ie Fri Mar 28 04:05:14 2003 From: prasadp77ie at yahoo.ie (=?iso-8859-1?q?Prasad=20Phirke?=) Date: Fri, 28 Mar 2003 09:05:14 +0000 (GMT) Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: <10878156@newblitzen.Dartmouth.EDU> Message-ID: <20030328090514.65554.qmail@web21006.mail.yahoo.com> What are you looking for in microarray analysis. You want to do total analysis or you just want to analyse data you got from analysis? I am currently working with Affymetrix systems Prasad --- Suman Rawat wrote: > I am looking for microarray analysis > > Suman Rawat, Ph.D > Department of Biological Sciences > HB 6044 > Gilman Lab, Dartmouth College > Hanover, NH 03755 > Phone: 603 646 0355 > 603 646 0503 > FAX : 603 646 1347 > _______________________________________________ > BiO_Bulletin_Board maillist - > BiO_Bulletin_Board at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board __________________________________________________ Do You Yahoo!? Everything you'll ever need on one web page from News and Sport to Email and Music Charts http://uk.my.yahoo.com From c.johnston at mail.cryst.bbk.ac.uk Fri Mar 28 08:01:25 2003 From: c.johnston at mail.cryst.bbk.ac.uk (Caroline Johnston) Date: Fri, 28 Mar 2003 13:01:25 +0000 Subject: [BiO BB] Re: help on biostat courseware In-Reply-To: <20030328090514.65554.qmail@web21006.mail.yahoo.com> References: <20030328090514.65554.qmail@web21006.mail.yahoo.com> Message-ID: <1048856485.3e8447a52cd65@webmail.cryst.bbk.ac.uk> Hi Prasad, I'm just starting my MRes project analysing gene expression data from affy rat arrays. I've tried to do a fair bit of background reading, but am rapidly coming to the conclusion that everyone who has ever written a paper on microarray analysis has a different opinion about how it should be done. I was hoping you'd be able to give me some advice from your experience with affy chips. Have you settled on a standard approach to analysing a set of chips? Many thanks, Caroline. Quoting Prasad Phirke : > > I am currently working with Affymetrix systems > > Prasad ------------------------------------------------- This mail sent through IMP: http://horde.org/imp/ From seabi at indiatimes.com Sat Mar 29 01:39:20 2003 From: seabi at indiatimes.com (seabi) Date: Sat, 29 Mar 2003 12:09:20 +0530 Subject: [BiO BB] Re: help need tutorials Message-ID: <200303290607.LAA05729@WS0005.indiatimes.com> Collegues, I need your help in preparing lectures covering the following topics for my students. Kindly help me in tutorials.:: 1. Discuss the role of specific signalling cascades and post-transcriptional regulation on the establishment of A-P and D-V axis in Drosophila. To what extent are these processes (signalling and post-transcrip. reg) similar to the ones involved in vertebrate axis formation? 2. "Describe how basic helix-loop-helix proteins activate gene expression in the right cells at the right time". 3. Discuss how acetylation of lysines in proteins is linked to transcriptional regulation. 4. To what extent do different types of learning have cellular mechanisms in common? 5. Discuss the evidence implicating Hebbian synapses in the neural mechanisms of spatial learning. thanks seabi Get Your Private, Free E-mail from Indiatimes at http://email.indiatimes.com Buy The Best In BOOKS at http://www.bestsellers.indiatimes.com Bid for Air Tickets @ Re.1 on Air Sahara Flights. Just log on to http://airsahara.indiatimes.com and Bid Now ! -------------- next part -------------- An HTML attachment was scrubbed... URL: From seabi at indiatimes.com Sat Mar 29 01:46:29 2003 From: seabi at indiatimes.com (seabi) Date: Sat, 29 Mar 2003 12:16:29 +0530 Subject: [BiO BB] Re: Message-ID: <200303290614.LAA08897@WS0005.indiatimes.com> dear collegues, Do you have the copy or toturial of the below. If yes, kindly mail me. I will be highly obliged. RA Laskey, BM Honda, AD Mills, N -------------- next part -------------- An HTML attachment was scrubbed... URL: From seabi at indiatimes.com Sat Mar 29 01:47:03 2003 From: seabi at indiatimes.com (seabi) Date: Sat, 29 Mar 2003 12:17:03 +0530 Subject: [BiO BB] Re: chromatin assembly Message-ID: <200303290615.LAA09106@WS0005.indiatimes.com> dear collegues, Do you have the copy or toturial of the below. If yes, kindly mail me. I will be highly obliged. RA Laskey, BM Honda, AD Mills, NR Morris, AH Wyllie, JE Mertz, EM De Roberts, and JB Gurdon Chromatin assembly and transcription in eggs and oocytes of Xenopus laevis. Cold Spring Harb Symp Quant Biol, January 1, 1978; 42 Pt 1: 1-8. thanks seabi Get Your Private, Free E-mail from Indiatimes at http://email.indiatimes.com Buy The Best In BOOKS at http://www.bestsellers.indiatimes.com Bid for Air Tickets @ Re.1 on Air Sahara Flights. Just log on to http://airsahara.indiatimes.com and Bid Now ! -------------- next part -------------- An HTML attachment was scrubbed... URL: