[BiO BB] Visualisation software

Li Fan hustlf at cs.cmu.edu
Tue May 6 16:00:55 EDT 2003


Hello,

Thank you very much for your help. My background is computer science and I
have
just started working in bioinformatics. I want to use bayesnetwork
learning algorithm
to learn two pathways which are related to AML/ALL disease from AML/ALL
microarray data.
(I say two pathways because we have found the data can be correctly
classified by two groups
of genes).  Do you think it is feasible or if I have made some conceptual
errors?

Thank you.

Fan Li



Philipp Pagel wrote:

>         Hi!
>
> On Tue, May 06, 2003 at 10:38:15AM -0400, Li Fan wrote:
> > files, the author only provide the gene descriptions ,like
>
> > id=1882 [...] hemorrhage)  M27891\_at.
>                              ^^^^^^
> > id=6201 [...] INTERLEUKIN-8 PRECURSOR  Y00787\_s\_at
>                                          ^^^^^^
> > id=4211 [...] VIL2 Villin 2 (ezrin)  X51521\_at.
>                                        ^^^^^^
> The codes I marked with "^" appear to be Genbank accession numbers. So
> if you extract them from the file you can write a little script that
> gets the entries from the database.
>
> cu
>         Philipp
>
> --
> Dr. Philipp Pagel                                Tel.  +49-89-3187-3675
> Institute for Bioinformatics / MIPS              Fax.  +49-89-3187-3585
> GSF - National Research Center for Environment and Health
> Ingolstaedter Landstrasse 1
> 85764 Neuherberg
> Germany
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