[BiO BB] GO <--> SCOP mapping?

Iddo Friedberg idoerg at burnham.org
Wed Dec 29 12:07:26 EST 2004


Dan Bolser wrote:

>On Tue, 28 Dec 2004, Iddo Friedberg wrote:
>
>  
>
>>Hi all,
>>
>>Is there a GO to SCOP mapping? I know of GOA_PDB, I need a SCOP domain 
>>based table.
>>    
>>
>
>
>There is SCOPEC, for SCOP to EC mapping, and I think they were moving into
>the GO arena.
>
>http://www.enzome.com/databases/scopec.php
>
>
>IMHO EC is a better ontology than the GO Molecular Function Ontology, but
>I am happy to be slammed on that point.
>  
>

E.C. only annotates enzymatic functions. Yes, for enzymes E.C. is 
probably more suitable. However, E.C. does not annotate non-enzymatic 
functions, and definitely does not annotate biological process and 
cellular location.



-- 
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037 USA
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 713 9930
http://ffas.ljcrf.edu/~iddo




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