[BiO BB] Drug Delivery

Indranil Mitra imitra at myezconnect.com
Mon Feb 16 23:19:43 EST 2004 

I need the information on drug delivery mechanism for customized drugs.
Best Regards,
IM

-----Original Message-----
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Sent: Monday, February 16, 2004 10:31 PM
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Today's Topics:

   1. Re: [Fwd: Small Genome Similarity] (val)
   2. Need Literature on Drug Deliver system (Indranil Mitra)
   3. gene prediction (=?iso-8859-1?q?deepan=20chakravarthy=20n?=)
   4. bioinformatics algorithms (=?iso-8859-1?q?deepan=20chakravarthy=20n?=)
   5. RE: bioinformatics algorithms (Svensson, B.A.T. (HKG))
   6. RE: gene prediction (Svensson, B.A.T. (HKG))
   7. RE: Need Literature on Drug Deliver system (Austin Tanney)
   8. RE: gene prediction (Dan Bolser)
   9. Re: bioinformatics algorithms (Catherine Letondal)
  10. Re: bioinformatics algorithms (=?iso-8859-1?q?prathibha=20bharathi?=)

--__--__--

Message: 1
From: "val" <val at vtek.com>
To: <bio_bulletin_board at bioinformatics.org>
Subject: Re: [BiO BB] [Fwd: Small Genome Similarity]
Date: Sun, 15 Feb 2004 15:48:06 -0500
Reply-To: bio_bulletin_board at bioinformatics.org

Yes, seemingly right, but a protein-expression machinery
depends as well on local translation env, and may send mixed
messages about the DNA features.  So, the homologies - yes,
but what they indicate? Right?
cheers,
val

----- Original Message -----
From: "Iddo Friedberg" <idoerg at burnham.org>
To: <bio_bulletin_board at bioinformatics.org>; <t.fiedler at umiami.edu>
Sent: Saturday, February 14, 2004 11:11 PM
Subject: Re: [BiO BB] [Fwd: Small Genome Similarity]


>
>
> Generally, the strategy should be to look for homology in the translated
> regions, using the protein amino-acid sequence. Protein sequences are
> much less "noisy" than the DNA sequences coding them, so using a protein
> sequence your search sensitivity is  enhanced.
> Furthermore, you have better software to match distantly similar
> sequences using protein sequences, starting at PSI-BLAST and moving up
> to such stuff as 3D-PSSM, FFAS03, etc.
>
> Hope this gets you on the right track.
>
> Iddo
>
> J.W. Bizzaro wrote:
> > Please CC reply to <t.fiedler at umiami.edu>.  Jeff
> >
> >
> > ------------------------------------------------------------------------
> >
> > Subject:
> > Small Genome Similarity
> > From:
> > "Tristan Fiedler" <t.fiedler at umiami.edu>
> > Date:
> > Thu, 12 Feb 2004 19:19:42 -0500 (EST)
> > To:
> > Mailman-owner at bioinformatics.org
> >
> >
> > Dear BIO,
> >
> > Could you please post the following to the most suitable discussion
group
> > within bioinformatics.org ?  Thank you kindly in advance.
> >
> > ##########################
> > I am looking at a novel 2.4 KB viral genome and want to see if anything
> > homologous is known.
> >
> > Have tried blastn,blastx variants but nothing comes up (possibly due to
> > frame or simply divergence).
> >
> > This beastie may replicate in the mitochondria of vertebrates so
> > translations may need to use mito not nuclear codons.
> >
> > Please let me know if you have any suggestions or experience looking at
> > similar sequences.
> >
> > Thank you,
> >
> > Tristan
> >
>
> --
> Iddo Friedberg, Ph.D.
> The Burnham Institute
> 10901 N. Torrey Pines Rd.
> La Jolla, CA 92037
> USA
> Tel: +1 (858) 646 3100 x3516
> Fax: +1 (858) 713 9930
> http://ffas.ljcrf.edu/~iddo
>
> _______________________________________________
> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>


--__--__--

Message: 2
From: "Indranil Mitra" <imitra at myezconnect.com>
To: <bio_bulletin_board at bioinformatics.org>
Date: Mon, 16 Feb 2004 12:42:35 +0530
Organization: MEC Technologies
Subject: [BiO BB] Need Literature on Drug Deliver system
Reply-To: bio_bulletin_board at bioinformatics.org


Hii,
Anybody out there can help me on Drug Delivery related literature/URL etc.
Help would be highly appreciated.
Best regards,
IM
-----Original Message-----
From: bio_bulletin_board-admin at bioinformatics.org
[mailto:bio_bulletin_board-admin at bioinformatics.org] On Behalf Of
bio_bulletin_board-request at bioinformatics.org
Sent: Sunday, February 15, 2004 10:31 PM
To: bio_bulletin_board at bioinformatics.org
Subject: BiO_Bulletin_Board digest, Vol 1 #637 - 2 msgs



--__--__--

Message: 3
Date: Mon, 16 Feb 2004 10:02:05 +0000 (GMT)
From: =?iso-8859-1?q?deepan=20chakravarthy=20n?= <deepan_3356 at yahoo.co.in>
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] gene prediction
Reply-To: bio_bulletin_board at bioinformatics.org

hello,
    i would like to know some of the softwares that
are 
used for gene prediction for eukaryotes.


=====
---------------------------------------------
deepan chakravarthy n
2nd year,(4th sem),
b.tech(biotech),
center for biotechnology,
anna university ,
chennai.
ph no:
hostel:044-22354862,room no207,
home:04287-241199,04287-244399,
address:
 ac tech hostel (jh 207),
 anna university,
 chennai-25.

________________________________________________________________________
Yahoo! India Insurance Special: Be informed on the best policies, services,
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Message: 4
Date: Mon, 16 Feb 2004 10:04:12 +0000 (GMT)
From: =?iso-8859-1?q?deepan=20chakravarthy=20n?= <deepan_3356 at yahoo.co.in>
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] bioinformatics algorithms
Reply-To: bio_bulletin_board at bioinformatics.org

hello,
    i would like to know some websites to learn the 
basic bioinformatics algorithms.
deepan

=====
---------------------------------------------
deepan chakravarthy n
2nd year,(4th sem),
b.tech(biotech),
center for biotechnology,
anna university ,
chennai.
ph no:
hostel:044-22354862,room no207,
home:04287-241199,04287-244399,
address:
 ac tech hostel (jh 207),
 anna university,
 chennai-25.

________________________________________________________________________
Yahoo! India Insurance Special: Be informed on the best policies, services,
tools and more. 
Go to: http://in.insurance.yahoo.com/licspecial/index.html

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Message: 5
From: "Svensson, B.A.T. (HKG)" <B.A.T.Svensson at lumc.nl>
To: "'bio_bulletin_board at bioinformatics.org '"
<bio_bulletin_board at bioinformatics.org>
Subject: RE: [BiO BB] bioinformatics algorithms
Date: Mon, 16 Feb 2004 11:30:13 +0100
Reply-To: bio_bulletin_board at bioinformatics.org

http://www.google.nl/search?q=basic+bioinformatics+algorithms&ie=UTF-8&oe=UT
F-8&hl=nl&btnG=Google+zoeken&lr==

gives +43 thousand hits.

-----Original Message-----
From: deepan chakravarthy n
To: bio_bulletin_board at bioinformatics.org
Sent: 2004-02-16 11:04
Subject: [BiO BB] bioinformatics algorithms

hello,
    i would like to know some websites to learn the 
basic bioinformatics algorithms.
deepan

=====
---------------------------------------------
deepan chakravarthy n
2nd year,(4th sem),
b.tech(biotech),
center for biotechnology,
anna university ,
chennai.
ph no:
hostel:044-22354862,room no207,
home:04287-241199,04287-244399,
address:
 ac tech hostel (jh 207),
 anna university,
 chennai-25.

________________________________________________________________________
Yahoo! India Insurance Special: Be informed on the best policies,
services, tools and more. 
Go to: http://in.insurance.yahoo.com/licspecial/index.html
_______________________________________________
BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
https://bioinformatics.org/mailman/listinfo/bio_bulletin_board

--__--__--

Message: 6
From: "Svensson, B.A.T. (HKG)" <B.A.T.Svensson at lumc.nl>
To: "'bio_bulletin_board at bioinformatics.org '"
<bio_bulletin_board at bioinformatics.org>
Subject: RE: [BiO BB] gene prediction
Date: Mon, 16 Feb 2004 11:31:23 +0100
Reply-To: bio_bulletin_board at bioinformatics.org

http://www.google.nl/search?hl=nl&ie=UTF-8&oe=UTF-8&q=gene+prediction+for+eu
karyotes&btnG=Google+zoeken&lr= 

Unfortunately only +16 thousand hits.

-----Original Message-----
From: deepan chakravarthy n
To: bio_bulletin_board at bioinformatics.org
Sent: 2004-02-16 11:02
Subject: [BiO BB] gene prediction

hello,
    i would like to know some of the softwares that
are 
used for gene prediction for eukaryotes.


=====
---------------------------------------------
deepan chakravarthy n
2nd year,(4th sem),
b.tech(biotech),
center for biotechnology,
anna university ,
chennai.
ph no:
hostel:044-22354862,room no207,
home:04287-241199,04287-244399,
address:
 ac tech hostel (jh 207),
 anna university,
 chennai-25.

________________________________________________________________________
Yahoo! India Insurance Special: Be informed on the best policies,
services, tools and more. 
Go to: http://in.insurance.yahoo.com/licspecial/index.html
_______________________________________________
BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
https://bioinformatics.org/mailman/listinfo/bio_bulletin_board

--__--__--

Message: 7
Subject: RE: [BiO BB] Need Literature on Drug Deliver system
Date: Mon, 16 Feb 2004 10:46:23 -0000
From: "Austin Tanney" <Austin.Tanney at arragen.com>
To: <bio_bulletin_board at bioinformatics.org>
Reply-To: bio_bulletin_board at bioinformatics.org

What sort of Drug Delivery???

-----Original Message-----
From: Indranil Mitra [mailto:imitra at myezconnect.com]
Sent: 16 February 2004 07:13
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] Need Literature on Drug Deliver system



Hii,
Anybody out there can help me on Drug Delivery related literature/URL =
etc.
Help would be highly appreciated.
Best regards,
IM
-----Original Message-----
From: bio_bulletin_board-admin at bioinformatics.org
[mailto:bio_bulletin_board-admin at bioinformatics.org] On Behalf Of
bio_bulletin_board-request at bioinformatics.org
Sent: Sunday, February 15, 2004 10:31 PM
To: bio_bulletin_board at bioinformatics.org
Subject: BiO_Bulletin_Board digest, Vol 1 #637 - 2 msgs


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Message: 8
Date: Mon, 16 Feb 2004 11:21:14 +0000 (GMT)
From: Dan Bolser <dmb at mrc-dunn.cam.ac.uk>
To: "'bio_bulletin_board at bioinformatics.org '"
<bio_bulletin_board at bioinformatics.org>
Subject: RE: [BiO BB] gene prediction
Reply-To: bio_bulletin_board at bioinformatics.org


perhaps that is the problem?

On Mon, 16 Feb 2004, Svensson, B.A.T. (HKG) wrote:

>
http://www.google.nl/search?hl=nl&ie=UTF-8&oe=UTF-8&q=gene+prediction+for+eu
> karyotes&btnG=Google+zoeken&lr= 
> 
> Unfortunately only +16 thousand hits.
> 
> -----Original Message-----
> From: deepan chakravarthy n
> To: bio_bulletin_board at bioinformatics.org
> Sent: 2004-02-16 11:02
> Subject: [BiO BB] gene prediction
> 
> hello,
>     i would like to know some of the softwares that
> are 
> used for gene prediction for eukaryotes.
> 
> 
> =====
> ---------------------------------------------
> deepan chakravarthy n
> 2nd year,(4th sem),
> b.tech(biotech),
> center for biotechnology,
> anna university ,
> chennai.
> ph no:
> hostel:044-22354862,room no207,
> home:04287-241199,04287-244399,
> address:
>  ac tech hostel (jh 207),
>  anna university,
>  chennai-25.
> 
> ________________________________________________________________________
> Yahoo! India Insurance Special: Be informed on the best policies,
> services, tools and more. 
> Go to: http://in.insurance.yahoo.com/licspecial/index.html
> _______________________________________________
> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> _______________________________________________
> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> 


--__--__--

Message: 9
From: Catherine Letondal <letondal at pasteur.fr>
To: bio_bulletin_board at bioinformatics.org
Subject: Re: [BiO BB] bioinformatics algorithms 
Date: Mon, 16 Feb 2004 12:31:40 +0100
Reply-To: bio_bulletin_board at bioinformatics.org


Hi,

You can try:
http://www.pasteur.fr/cgi-bin/biology/bnb_s.pl?english=1&query=algorithm

"Svensson, B.A.T. (HKG)" wrote:
>
http://www.google.nl/search?q=basic+bioinformatics+algorithms&ie=UTF-8&oe=UT
> F-8&hl=nl&btnG=Google+zoeken&lr==
> 
> gives +43 thousand hits.
> 
> -----Original Message-----
> From: deepan chakravarthy n
> To: bio_bulletin_board at bioinformatics.org
> Sent: 2004-02-16 11:04
> Subject: [BiO BB] bioinformatics algorithms
> 
> hello,
>     i would like to know some websites to learn the 
> basic bioinformatics algorithms.
> deepan
> 

--
Catherine Letondal -- Pasteur Institute Computing Center

--__--__--

Message: 10
Date: Mon, 16 Feb 2004 12:06:10 +0000 (GMT)
From: =?iso-8859-1?q?prathibha=20bharathi?= <prathibha_562 at yahoo.co.in>
Subject: Re: [BiO BB] bioinformatics algorithms
To: bio_bulletin_board at bioinformatics.org
Reply-To: bio_bulletin_board at bioinformatics.org

--0-1554242831-1076933170=:84683
Content-Type: text/plain; charset=iso-8859-1
Content-Transfer-Encoding: 8bit

Hello...
      There is one book(very good) "BIOINFORMATICS" by Prof:David Mount .Try
this and visit it's companion website http://www.bioinformaticsonline.org 
one imp thing here is you must have the access code to get registered, to
read the contents of the website.You can find the access code on the inside
front cover of the book.
                                hope u can find some stuff (which u want)
there.
 This may help u ,if u are a fresher to this field;( I don't about Gurus of
this field)
                                                          bye
                                                       Prathibha,
                                               B-tech (final year),
                                               Sree Vidyaniketan Engineering
college.
                                               Andhra Pradesh,
                                                India.
 
                                                
deepan chakravarthy n <deepan_3356 at yahoo.co.in> wrote:
hello,
i would like to know some websites to learn the 
basic bioinformatics algorithms.
deepan

=====
---------------------------------------------
deepan chakravarthy n
2nd year,(4th sem),
b.tech(biotech),
center for biotechnology,
anna university ,
chennai.
ph no:
hostel:044-22354862,room no207,
home:04287-241199,04287-244399,
address:
ac tech hostel (jh 207),
anna university,
chennai-25.

________________________________________________________________________
Yahoo! India Insurance Special: Be informed on the best policies, services,
tools and more. 
Go to: http://in.insurance.yahoo.com/licspecial/index.html
_______________________________________________
BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
Yahoo! India Insurance Special: Be informed on the best policies, services,
tools and more.
--0-1554242831-1076933170=:84683
Content-Type: text/html; charset=iso-8859-1
Content-Transfer-Encoding: 8bit

<DIV>Hello...</DIV>
<DIV>      There is one book(very good)
"BIOINFORMATICS" by Prof:David Mount .Try this and visit it's companion
website <A
href="http://in.f82.mail.yahoo.com/ym/www.bioinformaticsonline.org"></A><A
href="http://www.bioinformaticsonline.org">http://www.bioinformaticsonline.o
rg</A> <A href="http://www.bioinformaticsonline.org/"></A><BR>one imp thing
here is you must have the access code to get registered, to read the
contents of the website.You can find the access code on the inside front
cover of the book.</DIV>
<DIV>           &nbsp
;            &nb
sp;       hope u can find some stuff (which u
want) there.</DIV>
<DIV> This may help u ,if u are a fresher to this field;( I don't about
Gurus of this field)</DIV>
<DIV>           &nbsp
;            &nb
sp;            &
nbsp;           &nbsp
;        bye</DIV>
<DIV>           &nbsp
;            &nb
sp;            &
nbsp;           &nbsp
;     Prathibha,</DIV>
<DIV>           &nbsp
;            &nb
sp;            &
nbsp;         B-tech (fina
l year),</DIV>
<DIV>           &nbsp
;            &nb
sp;            &
nbsp;         Sree Vidyaniketan
Engineering college.</DIV>
<DIV>           &nbsp
;            &nb
sp;            &
nbsp;         Andhra
Pradesh,</DIV>
<DIV>           &nbsp
;            &nb
sp;            &
nbsp;          India.</DIV
>
<DIV> </DIV>
<DIV>           &nbsp
;            &nb
sp;            &
nbsp;          <BR><B><I>deepan
chakravarthy n <deepan_3356 at yahoo.co.in></I></B> wrote:</DIV>
<BLOCKQUOTE class=replbq style="BORDER-LEFT: #1010ff 2px solid; MARGIN-LEFT:
5px; PADDING-LEFT: 5px">hello,<BR>i would like to know some websites to
learn the <BR>basic bioinformatics
algorithms.<BR>deepan<BR><BR>=====<BR>--------------------------------------
-------<BR>deepan chakravarthy n<BR>2nd year,(4th
sem),<BR>b.tech(biotech),<BR>center for biotechnology,<BR>anna university
,<BR>chennai.<BR>ph no:<BR>hostel:044-22354862,room
no207,<BR>home:04287-241199,04287-244399,<BR>address:<BR>ac tech hostel (jh
207),<BR>anna
university,<BR>chennai-25.<BR><BR>__________________________________________
______________________________<BR>Yahoo! India Insurance Special: Be
informed on the best policies, services, tools and more. <BR>Go to:
http://in.insurance.yahoo.com/licspecial/index.html<BR>_____________________
__________________________<BR>BiO_Bulletin_Board maillist -
 
BiO_Bulletin_Board at bioinformatics.org<BR>https://bioinformatics.org/mailman/
listinfo/bio_bulletin_board</BLOCKQUOTE><p><font face=arial size=-1>
<a
href="http://in.rd.yahoo.com/specials/mailtag/*http://in.insurance.yahoo.com
/licspecial/index.html" target="_blank"><b>Yahoo! India Insurance
Special</a>:</b> Be informed on the best policies, services, tools and
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