[BiO BB] Non-redudant swissprot protein sequences
dmb at mrc-dunn.cam.ac.uk
Fri Jul 23 08:55:57 EDT 2004
They do this already at uniprot, which is nice. It is a service called
You can get 100, 90 and 50% nr, where the 90 set is derived from the 100
set (via a two step process), and 50 is derived from 90 via a three step
I still haven't quite got my head round the way they handle varsplic in
uniref with relation to uniprot.
It is probably documented though.
On Thu, 22 Jul 2004, Iddo wrote:
>How about downloading the entire SWISSPROT and then clustering it
>yourself using CD-HIT?
>Ya Zhang wrote:
>> Does anyone know where can I download swissprot prtein sequences with
>> similarity lower than 95% to each other? I know the ASTRAL has such
>> type of dataset for PDB sequences. Is there anyone know how to make the
>> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
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