[BiO BB] Search reverse repeat
yjzhang at noble.org
Tue Jun 1 11:46:54 EDT 2004
Which similarity search program will align reverse repeats in the genome?
For example, if I have 2 sequences,
Seq A and Seq B are reverse repeats to each other.
BLAST does not align A and B.
I can manipulate the sequences by reversing one seq and then align, but I'd
like to know whether there is a program that align A and B without extra
sequence manipulation. Any information is appreciated.
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