[BiO BB] Ka/Ks
dmnunif at charter.net
Sun Jun 27 12:02:38 EDT 2004
----- Original Message -----
From: Peter Groenen
To: bio_bulletin_board at bioinformatics.org
Sent: Friday, June 25, 2004 5:27 PM
Subject: [BiO BB] Ka/Ks
I am looking for a command line tool that can handle protein alignments as input and aligns the corresponding transcripts. I want to use it for Ka/Ks determination.
Secondly, I need something like a "sliding " Ka/Ks determination to see if there is a difference within a protein when looking at smaller segments.
I looked at SNAP, and also PAML but they are not very straightforward in use, especially hte diffenret formats are giving me trouble.
Thanks in advance.
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