[Bio BB] Implementation or software packages of suffix tree

[Catherine Letondal]

"Chia-Yu Su" wrote:
> 
> Hi,
> 
> I want to construct suffix trees to extract repeats from sequences.
> I found several softwares from the web (by Dan Gusfield, Ting Chen, =
> etc).
> Has anyone used any recommended suffix tree software?
> Are there any implementation or softwares of suffix trees which allows =
> long sequence inputs and=20
> generate results in linear time?
> Please give me some suggestions about suffix tree software and where to =
> download the web.

You can look at:
http://www-igm.univ-mlv.fr/~marsan/recherches.html
and http://www-igm.univ-mlv.fr/~marsan/smile.html

> 
> Thanks a lot for your help!
> 
> Best regards,
> Chia-Yu
> ------------
> Chia-Yu Su
> Bioinformatics Program of=20
> Taiwan International Graduate Program
> Academia Sinica, Taiwan
> 
> E-mail: cysu at iis.sinica.edu.tw
> Phone: +886-2-27883799 ext. 2302
> Fax: +886-2-27824814

--
Catherine Letondal -- Pasteur Institute Computing Center