[BiO BB] Getting promotor region sequences of Yeast

[Thomas Schlitt]

Dear Junkuk
the best tool I know for bakers yeast and pombe is part of expression
profiler. Have a look at http://ep.ebi.ac.uk The link "Genomes" links to a
tool developed
by Jaak Vilo which lets you choose genes by chromosome location or gene
name and on the next page the option "Sequence extraction" lets you choose
which part of the sequence for each gene you want counting from the ATG
start codon - for upstream sequences choose a negative number as "from"

Alternatively the database SGD has some files on their ftp server - I
think.

Cheers
Thomas



On Fri, 1 Oct 2004, Junguk Hur wrote:

> 
> Dear all, 
> 
> I am trying to get intergenic sequences of yeast genes for promotor
> analyses. 
> 
> I have a gene list of 7K but don't know how to get the upstream region
> sequences. 
> 
> The gene list and relevant data was obtained from the following sites,
> Professor Young's Lab, 
> 
> http://web.wi.mit.edu/young/location/
> 
> Does anybody have idea how to get thoes upstream region sequences?
> 
> Many thanks in advance, 
> 
> Junguk
> 
> _______________________________________________
> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> 

_____________________________________________________________
Thomas Schlitt, PhD 
British Antarctic Survey 
High Cross, Madingley Road                        
Cambridge CB3 0ET, UK 
Tel. ++44-1223-221656
tsc at bas.ac.uk
schlitt at ebi.ac.uk