[BiO BB] extract regions from chomosome
mike.fursov at gmail.com
Wed Apr 20 09:38:20 EDT 2005
Does this problem is still actual? I think I can write a simple plugin
that will extract series of subsequencies from a given file just as a
AFAIK each human chromosome is presented as set of confings. Do you
have per contig coordinates? How your list is looks like?
On 4/14/05, Mikhail Fursov <mike.fursov at gmail.com> wrote:
> I know the simple but not efficient way to extract a subsequence from
> whole sequence.
> We use GenomeBrowser (http://genome.unipro.ru) (trial is fully functional)
> Thw sequence of actions: load your genome -> choose select region
> option -> select region you need -> save selection to fasta or just
> copy it to clipboard.
> On 4/14/05, Dr. Christoph Gille <christoph.gille at charite.de> wrote:
> > I have a list of start positions and end postitions of human chromosoms
> > and would like to extract the respective nt-sequences.
> > It is a list of about 200 entries.
> > Does anybody know an efficient way ?
> > Thanks
> > Christoph
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