[BiO BB] Clustering small DNA sequences into groups

[Marcos Oliveira de Carvalho]

Hi Samantha,

BLASTCLUST can group DNA sequences. Maybe you will need to tweak the  
parameters (almost the same for BLAST). You can get it at the NCBI ftp:
ftp://ftp.ncbi.nih.gov/blast/

cheers
Marcos



On Tue, 09 Aug 2005 14:24:41 -0300, Samantha Fox <bioinfosm at gmail.com>  
wrote:

> Hi,
>
> I have a set of small DNA sequences (about 40) 6-10 bp, and wish to
> group them into clusters based on sequence.
>
> Any suggestions for doing that ?
>
> Thanks,
>
> Samantha
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