[BiO BB] BLAST: locally installed databases

Samantha Fox bioinfosm at gmail.com
Thu Aug 11 11:50:33 EDT 2005


That will help Ryan. Thanks.
And these are pre-formatted databases? And my guess is they goto the
data folder specified in .ncbirc ?

Thanks again,
Sumit

On 8/11/05, Ryan Golhar <golharam at umdnj.edu> wrote:
> I have a perl script running as a cron job to download the databases
> nightly if there are new tarballs available....
> 
> I can email you the script...
> 
> 
> -----Original Message-----
> From: bio_bulletin_board-bounces+golharam=umdnj.edu at bioinformatics.org
> [mailto:bio_bulletin_board-bounces+golharam=umdnj.edu at bioinformatics.org
> ] On Behalf Of Samantha Fox
> Sent: Thursday, August 11, 2005 11:09 AM
> To: bio_bulletin_board at bioinformatics.org
> Subject: [BiO BB] BLAST: locally installed databases
> 
> 
> Hello,
> I wish to have regularly updated databases from NCBI to use with my
> blastall command.
> 
> Is there an easy standard way to do so ?
> 
> Thanks,
> 
> Samantha
> _______________________________________________
> Bioinformatics.Org general forum  -
> BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> 
> _______________________________________________
> Bioinformatics.Org general forum  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>



More information about the BBB mailing list