[BiO BB] Java API for BLAST?

Ahmed Moustafa ahmed at users.sourceforge.net
Fri Dec 9 11:33:09 EST 2005

Hi Joe,

I thought of switching my project to Perl because I found BioPerl had 
more functionalities and more "documentation" than BioJava but am trying 
first to stay with Java, otherwise will go to BioPerl.



On 12/9/2005 9:45 AM, Joe Landman wrote:

> Hi Ahmed:
>   You might look into hooking into the BioPerl bits from Java (RMI I 
> think).  This shouldn't be too difficult.
> Joe
> Ahmed Moustafa wrote:
>> Hi All!
>> Is there some sort of a Java package to do BLAST search (remote or 
>> local)? I went through BioJava and I could not find something like 
>> that, it seemed there was only a parser for the BLAST XML output.
>> Thanks in advance!
>> Ahmed

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