[BiO BB] Java API for BLAST?

[Ahmed Moustafa]

Hi Joe,

I thought of switching my project to Perl because I found BioPerl had 
more functionalities and more "documentation" than BioJava but am trying 
first to stay with Java, otherwise will go to BioPerl.

Thanks!

Ahmed

On 12/9/2005 9:45 AM, Joe Landman wrote:

> Hi Ahmed:
>
>   You might look into hooking into the BioPerl bits from Java (RMI I 
> think).  This shouldn't be too difficult.
>
> Joe
>
> Ahmed Moustafa wrote:
>
>> Hi All!
>>
>> Is there some sort of a Java package to do BLAST search (remote or 
>> local)? I went through BioJava and I could not find something like 
>> that, it seemed there was only a parser for the BLAST XML output.
>>
>> Thanks in advance!
>>
>> Ahmed
>