[BiO BB] Comparing whole genome sequences

Edith Schlagenhauf ediths at unizh.ch
Wed Dec 21 03:51:56 EST 2005


you may have a look at the MUMmer software (tigr.org). Especially
at the NUCmer alignment script which allows for multiple reference
and multiple query sequences to be aligned in a many vs. many fashion.


Dr Edith Schlagenhauf
Institute of Plant Biology
University of Zurich
Zollikerstrasse 107
CH-8008 Zurich

e-mail: ediths AT botinst DOT unizh DOT ch
Tel.:	+41 1 634 82 78
Fax :	+41 1 634 82 04

On Tue, 20 Dec 2005, hamid wrote:

> I want to compare (align) whole genome of several organisms. How can I do
> that? there are several tools such as mVISTA that can align multiple
> preprocessed sequences but I want to compare my own organisms. for example
> if I want to compare 3 strains of brusella.
> Thanks
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