[BiO BB] generate random motifs

Sole Acha, Xavi x.sole at ico.scs.es
Thu Jul 14 09:24:28 EDT 2005

Perhaps this isn't the most straight way of doing it, but If you connect
Perl with the statistical software R you could generate this random
motifs you mention. R can also be called in batch mode from Perl or
other scripting languages such as Python or PHP (via a "system" command
or something similar).
Hope this helps,
-----Mensaje original-----
De: bio_bulletin_board-bounces+x.sole=ico.scs.es at bioinformatics.org
[mailto:bio_bulletin_board-bounces+x.sole=ico.scs.es at bioinformatics.org]
En nombre de Gao Zhang
Enviado el: dimecres, 13 / juliol / 2005 19:22
Para: bio_bulletin_board at bioinformatics.org
Asunto: [BiO BB] generate random motifs

Hi all,
I need some help to generate random motifs. The goal is to 
generate a random motif of width w.  Each position will
have a dominant letter with probability around 0.85.
I know there is python module TAMO
#Motif-emit> )
which can do this job.
Can anybody know how to do this using Perl/Bioperl?
Thank you very much and look forward to your reply!
Best Regards,

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