[BiO BB] Re: BiO_Bulletin_Board Digest, Vol 8, Issue 16

[Elavazhagan]

Hai
U can determine using any exon prediction tools like
Glimmer,Genescan,genemark,hmmgene etc.As well as u can use some of the
ORF finder tool that has been maintained in ncbi
(http://www.ncbi.nlm.nih.gov/projects/gorf/).From that u can easily
split the genome sequence into CDS and non coding regions(introns).

I think still it has not been predicted the exat functions of introns
and why do them exist in genome.

Bye.




On 6/21/05, bio_bulletin_board-request at bioinformatics.org
<bio_bulletin_board-request at bioinformatics.org> wrote:
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>    1. Re: Determining non-coding regions in a DNA sequence
>       (Sudhindra.Gadagkar at notes.udayton.edu)
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> ----------------------------------------------------------------------
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> Message: 1
> Date: Mon, 20 Jun 2005 10:54:36 -0400
> From: Sudhindra.Gadagkar at notes.udayton.edu
> Subject: Re: [BiO BB] Determining non-coding regions in a DNA sequence
> To: "The general forum at Bioinformatics.Org"
> 	<bio_bulletin_board at bioinformatics.org>
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> 	<OF3034686E.8FF7134B-ON85257026.0051BB25-85257026.0051E97E at notes.udayton.edu>
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> 
> Vibhor,
> 
> There may be others, but I know GrailExp 
> (http://compbio.ornl.gov/grailexp/) does what you are looking for.  And 
> it's free.
> 
> Good luck,
> 
> Sudhindra Gadagkar
> 
> ----------------------------------------------------------------------------
> Sudhindra R. Gadagkar, Ph.D.
> Department of Biology
> University of Dayton
> 300 College Park
> Dayton, OH 45469-2320
> 
> Ph: (937) 229-2410
> Fax: (937) 229-2021
> Email: gadagkar at notes.udayton.edu
> ----------------------------------------------------------------------------
> 
> 
> 
> 
> "Vibhor Gupta" <vxg189 at bham.ac.uk> 
> Sent by: 
> bio_bulletin_board-bounces+gadagkar=notes.udayton.edu at bioinformatics.org
> 06/20/2005 10:08 AM
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> Subject
> [BiO BB] Determining non-coding regions in a DNA sequence
> 
> 
> 
> 
> 
> 
> Hello,
>  
> Is there a program that could determine the non-coding regions (and other 
> elements such as repeat elements, coding regions etc) that are present 
> within a given DNA sequence. Thanking you all. 
>  
> Mr. Vibhor Gupta
> Research Associate (Chromatin and Gene Expression Group)
> Division of Immunity and Infection - Anatomy
> Institute of Biomedical Research
> University of Birmingham
> Birmingham - B15 2TT
> Email: v.gupta.1 at bham.ac.uk
> Telephone number: 0121-4158684
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-- 
E.Elavazhagan
09444332083