[BiO BB] Transcription factors prediction

[Andrea Franceschini]

In   "Nature Biotechnology  23, 137 - 144  Published online: 06 January 
2005; Assessing computational tools for the discovery of transcription 
factor binding sites"  you can find the unswer to your question.
http://www.nature.com/cgi-taf/DynaPage.taf?file=/nbt/journal/v23/n1/full/nbt1053.html

The suggestion in the article to obtain the best results is to analyze your 
sequences with both these software :
Weeder Web:  http://159.149.109.16:8080/weederWeb/
Motif Sampler: http://www.esat.kuleuven.ac.be/~thijs/Work/MotifSampler.html



Andrea Franceschini





----- Original Message ----- 
From: "Davide Eletto" <deletto at unisa.it>
To: "The general forum at Bioinformatics.Org" 
<bio_bulletin_board at bioinformatics.org>
Sent: Tuesday, March 08, 2005 3:35 PM
Subject: [BiO BB] Transcription factors prediction


> Hi there,
> anyone of you could be so kind to give me the name of the most common FREE 
> *Transcription factors prediction *software (online, indeed), that is able 
> to retrieve a list of putative nuclear transc fact. by a DNA sequence?
>
> Thanks a lot in advance
>
> davide eletto
> ITALIA (one of six nations)
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