[BiO BB] mpiblast

sravan sravan sravan_111 at rediffmail.com
Fri May 20 13:49:44 EDT 2005

  Dear Sir, Thanks for the suggestions.
 I have installed the tool on all the nodes and set up .ncbirc.
Shared=/apps/Databases/blastdb ( full permission)
Local=/tmp/mpiblast( full permission)

Ncbi:NCBI-2.2.10-5.x86_64.rpm| mpiblast: mpiblast-1.3.0-2LAM.x86_64.rpm

As a user I have done mpiformatdb -i silkcds -N 20 -p F which generated  database in /apps/Databases/blastdb/ but : with rw-r--r-- permission.

Then I have executed mpiblast.sh ( /usr/local/bin/mpiblast  -p blastn -d /apps/Databases/blastdb/silkcds -i /home/sravan/demorun/blast/SW_ge2k_BGF.cds -o /home/sravan/demorun/blast/mpiblast.out).

I have got the following error message:
(0) Error opening: /apps/Databases/blastdb///apps/Databases/blastdb/silkcds.dbs
Fatal Error:
db_spec.cpp(DbSpecFile): Unable to open file
One of the processes started by mpirun has exited with a nonzero exit
code.  This typically indicates that the process finished in error.
If your process did not finish in error, be sure to include a "return
0" or "exit(0)" in your C code before exiting the application.

PID 11355 failed on node n0 ( with exit status 1.
So in this case how do I proceed? I strongly appreciate your early reply.

Thank you very much.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/bbb/attachments/20050520/4b9ea483/attachment.html>

More information about the BBB mailing list