[BiO BB] evaluating alignment algothythms

Boris Steipe boris.steipe at utoronto.ca
Wed Nov 2 17:59:57 EST 2005


The reference database is BAliBASE and on the site you will find C  
source to compute the score.




On 2 Nov 2005, at 16:44, Dr. Christoph Gille wrote:

> To compare different algorhythms for multiple sequence alignments
> I need to compare the alignment outputs to a benchmark alignment.
> Do programs exist that can take a computed alignment and compare it
> to the "optimal" alignment and produce a score ?
> Many thanks
> Christoph
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